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MS019253 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019253
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box domain-containing protein
Genome locationscaffold156:661222..661587
RNA-Seq ExpressionMS019253
SyntenyMS019253
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4319460.1 unnamed protein product [Prunus armeniaca]4.0e-1742.62Show/hide
Query:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILR-PQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTKPTF
        W+ L  DIME I   LNL++ I  + +CKSW SL ++ D    PQ+PWLLLP   + + + F +  + K +T  LPK V  G+V GCSKGW+V + +   
Subjt:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILR-PQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTKPTF

Query:  --KISLFNPIFGVQYDLPLLPT
          K+ L NPI   Q+ LP L T
Subjt:  --KISLFNPIFGVQYDLPLLPT

KAE8055702.1 hypothetical protein FH972_012527 [Carpinus fangiana]2.3e-1740.98Show/hide
Query:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDI-LRPQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFM--TKP
        W++L   IME I  +LN+ D +  S VCKSWRSL++Q  +   PQ+PWL+LPH  S + + F +  E   Y   LPK    G   GCSK W++    T+ 
Subjt:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDI-LRPQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFM--TKP

Query:  TFKISLFNPIFGVQYDLPLLPT
          ++ LFNP  G + +LP L T
Subjt:  TFKISLFNPIFGVQYDLPLLPT

KAF5726991.1 hypothetical protein HS088_TW22G00677 [Tripterygium wilfordii]1.4e-1741.6Show/hide
Query:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLL----LQSDILRPQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTK
        W +L  DI+  I  +L+  D+I+ S VCKSWRS+       S +L  Q PWLLLPH  S+H+++F +    + Y F LPK +  G   GCSKGW+V    
Subjt:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLL----LQSDILRPQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTK

Query:  PTF--KISLFNPIFGVQYDLPLLPT
          F  ++ LFNPI G   +LP + T
Subjt:  PTF--KISLFNPIFGVQYDLPLLPT

XP_021818908.1 uncharacterized protein LOC110760869 [Prunus avium]3.0e-1742.62Show/hide
Query:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILR-PQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTKPTF
        W+ L  DIME I   LNL++ I  + +CKSW SL ++ D    PQ+PWLLLP   + + + F +  + K +T  LPK V  G+V GCSKGW+V + +   
Subjt:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILR-PQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTKPTF

Query:  --KISLFNPIFGVQYDLPLLPT
          K+ L NPI   Q+ LP L T
Subjt:  --KISLFNPIFGVQYDLPLLPT

XP_022155350.1 uncharacterized protein LOC111022492 [Momordica charantia]1.3e-2859.17Show/hide
Query:  PWEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILRPQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTKPTF
        PW+ L  D+ME IA++LN  DYI  S VCKSW+SLLLQSDILRPQ PWLLLPH  S H IK  +  E K +TF +  G     VVGCSKGWV+F T  + 
Subjt:  PWEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILRPQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTKPTF

Query:  KISLFNPIFGVQYDLPLLPT
        KISLFNPI G +  L  LPT
Subjt:  KISLFNPIFGVQYDLPLLPT

TrEMBL top hitse value%identityAlignment
A0A5N6R432 F-box domain-containing protein1.1e-1740.98Show/hide
Query:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDI-LRPQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFM--TKP
        W++L   IME I  +LN+ D +  S VCKSWRSL++Q  +   PQ+PWL+LPH  S + + F +  E   Y   LPK    G   GCSK W++    T+ 
Subjt:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDI-LRPQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFM--TKP

Query:  TFKISLFNPIFGVQYDLPLLPT
          ++ LFNP  G + +LP L T
Subjt:  TFKISLFNPIFGVQYDLPLLPT

A0A6J1DM79 uncharacterized protein LOC1110224926.3e-2959.17Show/hide
Query:  PWEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILRPQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTKPTF
        PW+ L  D+ME IA++LN  DYI  S VCKSW+SLLLQSDILRPQ PWLLLPH  S H IK  +  E K +TF +  G     VVGCSKGWV+F T  + 
Subjt:  PWEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILRPQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTKPTF

Query:  KISLFNPIFGVQYDLPLLPT
        KISLFNPI G +  L  LPT
Subjt:  KISLFNPIFGVQYDLPLLPT

A0A6J5Y010 F-box domain-containing protein1.9e-1742.62Show/hide
Query:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILR-PQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTKPTF
        W+ L  DIME I   LNL++ I  + +CKSW SL ++ D    PQ+PWLLLP   + + + F +  + K +T  LPK V  G+V GCSKGW+V + +   
Subjt:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILR-PQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTKPTF

Query:  --KISLFNPIFGVQYDLPLLPT
          K+ L NPI   Q+ LP L T
Subjt:  --KISLFNPIFGVQYDLPLLPT

A0A6P5SZ44 uncharacterized protein LOC1107608691.5e-1742.62Show/hide
Query:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILR-PQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTKPTF
        W+ L  DIME I   LNL++ I  + +CKSW SL ++ D    PQ+PWLLLP   + + + F +  + K +T  LPK V  G+V GCSKGW+V + +   
Subjt:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILR-PQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTKPTF

Query:  --KISLFNPIFGVQYDLPLLPT
          K+ L NPI   Q+ LP L T
Subjt:  --KISLFNPIFGVQYDLPLLPT

A0A7J7BYQ0 F-box domain-containing protein6.6e-1841.6Show/hide
Query:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLL----LQSDILRPQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTK
        W +L  DI+  I  +L+  D+I+ S VCKSWRS+       S +L  Q PWLLLPH  S+H+++F +    + Y F LPK +  G   GCSKGW+V    
Subjt:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLL----LQSDILRPQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTK

Query:  PTF--KISLFNPIFGVQYDLPLLPT
          F  ++ LFNPI G   +LP + T
Subjt:  PTF--KISLFNPIFGVQYDLPLLPT

SwissProt top hitse value%identityAlignment
Q9FVS1 F-box/kelch-repeat protein At1g577902.5e-0630.25Show/hide
Query:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILRPQVPWLL-LPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSK-GWVVFMTKPT
        W+ L  +++ ++   L +KD +  S VCKSW    +   ++  + PWL+  P   +++D  F +    K YT  LPK +  G +V  SK GW++   + +
Subjt:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILRPQVPWLL-LPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSK-GWVVFMTKPT

Query:  FKISLFNPIFGVQYDLPLL
            LFNP       LP L
Subjt:  FKISLFNPIFGVQYDLPLL

Arabidopsis top hitse value%identityAlignment
AT1G57790.1 F-box family protein1.8e-0730.25Show/hide
Query:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILRPQVPWLL-LPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSK-GWVVFMTKPT
        W+ L  +++ ++   L +KD +  S VCKSW    +   ++  + PWL+  P   +++D  F +    K YT  LPK +  G +V  SK GW++   + +
Subjt:  WEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILRPQVPWLL-LPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSK-GWVVFMTKPT

Query:  FKISLFNPIFGVQYDLPLL
            LFNP       LP L
Subjt:  FKISLFNPIFGVQYDLPLL

AT3G07870.1 F-box and associated interaction domains-containing protein1.8e-0429.69Show/hide
Query:  EKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLL-----LQSDILRPQVPWLLLP-HLPSSHDIKFLNFLEE------KCYTFALPKGVDRGKVVGCSKG
        E L +DI+  I  +L +       FVC+SWRS+L     L S    P  P LLL    P  + + FL+  EE      K +T      +    VVG   G
Subjt:  EKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLL-----LQSDILRPQVPWLLLP-HLPSSHDIKFLNFLEE------KCYTFALPKGVDRGKVVGCSKG

Query:  WVVFMTKPTFKIS--LFNPIFGVQYDLP
         ++ ++   +  S  L+NP      +LP
Subjt:  WVVFMTKPTFKIS--LFNPIFGVQYDLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTAGGCCATGGGAAAAACTTGACAAAGATATTATGGAGACAATTGCAGTGCAACTTAATTTAAAGGATTATATTAGTTGCTCCTTTGTTTGCAAGTCATGGCGA
TCTCTTCTTTTACAATCTGATATTCTTCGGCCCCAAGTTCCATGGCTATTGCTTCCTCACCTCCCAAGTAGCCATGACATAAAATTTCTCAATTTTTTGGAAGAA
AAATGTTACACCTTTGCGTTGCCGAAGGGTGTCGATCGGGGAAAAGTTGTCGGGTGCTCCAAAGGTTGGGTTGTTTTCATGACTAAGCCTACGTTCAAAATCTCT
CTTTTTAATCCCATCTTCGGTGTTCAATACGACCTTCCGTTGCTACCGACG
mRNA sequenceShow/hide mRNA sequence
ATTAGGCCATGGGAAAAACTTGACAAAGATATTATGGAGACAATTGCAGTGCAACTTAATTTAAAGGATTATATTAGTTGCTCCTTTGTTTGCAAGTCATGGCGA
TCTCTTCTTTTACAATCTGATATTCTTCGGCCCCAAGTTCCATGGCTATTGCTTCCTCACCTCCCAAGTAGCCATGACATAAAATTTCTCAATTTTTTGGAAGAA
AAATGTTACACCTTTGCGTTGCCGAAGGGTGTCGATCGGGGAAAAGTTGTCGGGTGCTCCAAAGGTTGGGTTGTTTTCATGACTAAGCCTACGTTCAAAATCTCT
CTTTTTAATCCCATCTTCGGTGTTCAATACGACCTTCCGTTGCTACCGACG
Protein sequenceShow/hide protein sequence
IRPWEKLDKDIMETIAVQLNLKDYISCSFVCKSWRSLLLQSDILRPQVPWLLLPHLPSSHDIKFLNFLEEKCYTFALPKGVDRGKVVGCSKGWVVFMTKPTFKIS
LFNPIFGVQYDLPLLPT