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MS019273 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019273
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionnuclear transcription factor Y subunit B-7-like
Genome locationscaffold611:1678..2052
RNA-Seq ExpressionMS019273
SyntenyMS019273
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006598369.1 nuclear transcription factor Y subunit B-5 [Glycine max]4.3e-3564.75Show/hide
Query:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL
        E   G+ +++ + NGG++KE + LLPIANVGRLMK+ILP NAKISKEAKETMQEC SEFI FVT EASEKCR++ R+TV GDD+C AL +LGFD++A P+
Subjt:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL

Query:  RRYLCKYREQEEDEQKVNKSEE
        RRYL +YRE E D  KVN  E+
Subjt:  RRYLCKYREQEEDEQKVNKSEE

XP_010037376.1 nuclear transcription factor Y subunit B-5 [Eucalyptus grandis]5.6e-3573.08Show/hide
Query:  ISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLCKYREQ
        I  N G +KE + LLPIANVGR+MKQILP NAKISKEAKETMQEC SEFIGFVTGEASEKCR++ R+TV GDD+C A+E+LGFD++AGPLRRYL +YR+ 
Subjt:  ISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLCKYREQ

Query:  EEDE
        E D+
Subjt:  EEDE

XP_021647914.1 nuclear transcription factor Y subunit B-4-like [Hevea brasiliensis]4.3e-3566.67Show/hide
Query:  ADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLC
        A AS  SG  G++KE + LLPIANVGR+MKQILP NAKISKEAKETMQEC SEFI FVTGEAS+KC ++ R+TV GDD+C AL +LGFDD+A PL+RYL 
Subjt:  ADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLC

Query:  KYREQEED--EQKVNKSEER
        KYREQE +    + +K+EE+
Subjt:  KYREQEED--EQKVNKSEER

XP_022138615.1 nuclear transcription factor Y subunit B-7-like [Momordica charantia]5.1e-6098.4Show/hide
Query:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL
        EGDSGADASEISGNGG+LKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRD RRTVTGDDLCSALESLGFDDFAGPL
Subjt:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL

Query:  RRYLCKYREQEEDEQKVNKSEERRR
        RRYLCKYREQEEDEQKVNKSEERRR
Subjt:  RRYLCKYREQEEDEQKVNKSEERRR

XP_038876756.1 nuclear transcription factor Y subunit B-1-like [Benincasa hispida]5.6e-3567.5Show/hide
Query:  GDSGADASEISGN--GGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGP
        G S   +SE +GN  GGV+KE + LLPIANVGR+MKQILP NAKISKEAKETMQEC SEFI FVTGEAS+KC ++ R+TV GDD+C AL +LGFDD+A P
Subjt:  GDSGADASEISGN--GGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGP

Query:  LRRYLCKYREQEEDEQKVNK
        LRRYL +YRE E +  + NK
Subjt:  LRRYLCKYREQEEDEQKVNK

TrEMBL top hitse value%identityAlignment
A0A059D1M2 CBFD_NFYB_HMF domain-containing protein2.7e-3573.08Show/hide
Query:  ISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLCKYREQ
        I  N G +KE + LLPIANVGR+MKQILP NAKISKEAKETMQEC SEFIGFVTGEASEKCR++ R+TV GDD+C A+E+LGFD++AGPLRRYL +YR+ 
Subjt:  ISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLCKYREQ

Query:  EEDE
        E D+
Subjt:  EEDE

A0A0B2QKX1 Nuclear transcription factor Y subunit B-52.1e-3564.75Show/hide
Query:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL
        E   G+ +++ + NGG++KE + LLPIANVGRLMK+ILP NAKISKEAKETMQEC SEFI FVT EASEKCR++ R+TV GDD+C AL +LGFD++A P+
Subjt:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL

Query:  RRYLCKYREQEEDEQKVNKSEE
        RRYL +YRE E D  KVN  E+
Subjt:  RRYLCKYREQEEDEQKVNKSEE

A0A0R0G186 CBFD_NFYB_HMF domain-containing protein2.1e-3564.75Show/hide
Query:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL
        E   G+ +++ + NGG++KE + LLPIANVGRLMK+ILP NAKISKEAKETMQEC SEFI FVT EASEKCR++ R+TV GDD+C AL +LGFD++A P+
Subjt:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL

Query:  RRYLCKYREQEEDEQKVNKSEE
        RRYL +YRE E D  KVN  E+
Subjt:  RRYLCKYREQEEDEQKVNKSEE

A0A5J5QG75 CBFD_NFYB_HMF domain-containing protein3.6e-3565.83Show/hide
Query:  SGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRY
        +GAD+S ISG  G++KE + LLPIANVGR+MKQILP NAKISKEAKETMQEC SEFI FVTGEAS+KC ++ R+TV GDD+C AL +LGFD++A  L+RY
Subjt:  SGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRY

Query:  LCKYREQEEDEQKVNKSEER
        L +YREQE +    N++ ER
Subjt:  LCKYREQEEDEQKVNKSEER

A0A6J1C9Y3 nuclear transcription factor Y subunit B-7-like2.4e-6098.4Show/hide
Query:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL
        EGDSGADASEISGNGG+LKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRD RRTVTGDDLCSALESLGFDDFAGPL
Subjt:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL

Query:  RRYLCKYREQEEDEQKVNKSEERRR
        RRYLCKYREQEEDEQKVNKSEERRR
Subjt:  RRYLCKYREQEEDEQKVNKSEERRR

SwissProt top hitse value%identityAlignment
O04027 Nuclear transcription factor Y subunit B-46.3e-2962.75Show/hide
Query:  LKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLCKYREQEEDEQKV
        + + + LLPIANVGRLMKQILP+NAKISKEAK+T+QECA+EFI FVT EASEKC R+ R+TV GDD+  AL +LG D++A  + R+L KYRE E +  + 
Subjt:  LKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLCKYREQEEDEQKV

Query:  NK
        NK
Subjt:  NK

O82248 Nuclear transcription factor Y subunit B-51.8e-3165.31Show/hide
Query:  VLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLCKYREQEEDE
        ++KE + LLPIANVGR+MK ILPANAK+SKEAKETMQEC SEFI FVTGEAS+KC ++ R+TV GDD+C A+ +LGFDD+A  L++YL +YR  E ++
Subjt:  VLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLCKYREQEEDE

P25209 Nuclear transcription factor Y subunit B8.2e-2954.55Show/hide
Query:  GNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLCKYREQEE
        G GG ++E +  LPIAN+ R+MK+ +PAN KI+K+AKET+QEC SEFI F+T EAS+KC+R+ R+T+ GDDL  A+ +LGF+D+  PL+ YL KYRE E 
Subjt:  GNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLCKYREQEE

Query:  DEQKVNKSEE
        D +   KS +
Subjt:  DEQKVNKSEE

Q75IZ7 Nuclear transcription factor Y subunit B-86.3e-2955.86Show/hide
Query:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL
        + DSG  ++   G     +E +  LPIANV R+MK+ LPANAKISK+AKET+QEC SEFI F+TGEAS+KC+R+ R+T+ GDDL  A+ +LGF+D+  PL
Subjt:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL

Query:  RRYLCKYREQE
        + YL K+RE E
Subjt:  RRYLCKYREQE

Q9SIT9 Nuclear transcription factor Y subunit B-75.1e-3152Show/hide
Query:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL
        E + G+ +S+ + N    KE +  LPIANVGR+MK++LP N KISK+AKET+QEC SEFI FVTGEAS+KC+R+ R+T+ GDD+  A+ +LGF+D+  PL
Subjt:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL

Query:  RRYLCKYREQEEDEQKVNKSEERRR
        + YLCKYR+ E ++    K +++R+
Subjt:  RRYLCKYREQEEDEQKVNKSEERRR

Arabidopsis top hitse value%identityAlignment
AT1G09030.1 nuclear factor Y, subunit B44.5e-3062.75Show/hide
Query:  LKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLCKYREQEEDEQKV
        + + + LLPIANVGRLMKQILP+NAKISKEAK+T+QECA+EFI FVT EASEKC R+ R+TV GDD+  AL +LG D++A  + R+L KYRE E +  + 
Subjt:  LKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLCKYREQEEDEQKV

Query:  NK
        NK
Subjt:  NK

AT2G13570.1 nuclear factor Y, subunit B73.6e-3252Show/hide
Query:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL
        E + G+ +S+ + N    KE +  LPIANVGR+MK++LP N KISK+AKET+QEC SEFI FVTGEAS+KC+R+ R+T+ GDD+  A+ +LGF+D+  PL
Subjt:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL

Query:  RRYLCKYREQEEDEQKVNKSEERRR
        + YLCKYR+ E ++    K +++R+
Subjt:  RRYLCKYREQEEDEQKVNKSEERRR

AT2G47810.1 nuclear factor Y, subunit B51.3e-3265.31Show/hide
Query:  VLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLCKYREQEEDE
        ++KE + LLPIANVGR+MK ILPANAK+SKEAKETMQEC SEFI FVTGEAS+KC ++ R+TV GDD+C A+ +LGFDD+A  L++YL +YR  E ++
Subjt:  VLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLCKYREQEEDE

AT3G53340.1 nuclear factor Y, subunit B101.9e-2853.33Show/hide
Query:  DSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRR
        +SG D S  S N   ++E +  LPIAN+ R+MK+ LP N KI+K+AKETMQEC SEFI FVT EAS+KC+R+ R+T+ GDDL  A+ +LGF+D+  PL+ 
Subjt:  DSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRR

Query:  YLCKYREQEEDEQKVNKSEE
        YL +YRE E D +   K  E
Subjt:  YLCKYREQEEDEQKVNKSEE

AT4G14540.1 nuclear factor Y, subunit B33.8e-2955.26Show/hide
Query:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL
        + DSG       G     +E +  LPIANV R+MK+ LPANAKISK+AKET+QEC SEFI F+TGEAS+KC+R+ R+T+ GDDL  A+ +LGF+D+  PL
Subjt:  EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPL

Query:  RRYLCKYREQEEDE
        + YL KYRE E ++
Subjt:  RRYLCKYREQEEDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGGGAGATTCTGGAGCAGATGCTTCAGAGATCAGCGGCAATGGCGGAGTTCTAAAGGAGCCGGAGAATTTACTGCCGATCGCCAACGTCGGCCGATTGATGAAGCAGAT
TTTACCGGCGAACGCGAAGATTTCTAAGGAAGCGAAGGAAACGATGCAGGAATGCGCGTCGGAGTTCATCGGTTTCGTCACCGGCGAGGCGTCGGAAAAATGCCGGAGGG
ACGGCCGCCGGACGGTGACCGGAGATGACCTGTGCTCGGCTCTGGAATCCCTAGGATTCGACGATTTCGCCGGACCTTTGAGAAGGTACCTCTGTAAGTATAGGGAGCAA
GAAGAAGACGAACAGAAGGTAAATAAATCTGAAGAACGACGCCGT
mRNA sequenceShow/hide mRNA sequence
GAGGGAGATTCTGGAGCAGATGCTTCAGAGATCAGCGGCAATGGCGGAGTTCTAAAGGAGCCGGAGAATTTACTGCCGATCGCCAACGTCGGCCGATTGATGAAGCAGAT
TTTACCGGCGAACGCGAAGATTTCTAAGGAAGCGAAGGAAACGATGCAGGAATGCGCGTCGGAGTTCATCGGTTTCGTCACCGGCGAGGCGTCGGAAAAATGCCGGAGGG
ACGGCCGCCGGACGGTGACCGGAGATGACCTGTGCTCGGCTCTGGAATCCCTAGGATTCGACGATTTCGCCGGACCTTTGAGAAGGTACCTCTGTAAGTATAGGGAGCAA
GAAGAAGACGAACAGAAGGTAAATAAATCTGAAGAACGACGCCGT
Protein sequenceShow/hide protein sequence
EGDSGADASEISGNGGVLKEPENLLPIANVGRLMKQILPANAKISKEAKETMQECASEFIGFVTGEASEKCRRDGRRTVTGDDLCSALESLGFDDFAGPLRRYLCKYREQ
EEDEQKVNKSEERRR