CuGenDBv2

Gene ID	MS019281
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	60S ribosome subunit biogenesis protein NIP7 homolog
Genome location	scaffold611:43827..44075
RNA-Seq Expression	MS019281
Synteny	MS019281
Gene Ontology terms	GO:0042255 - ribosome assembly (biological process) GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component) GO:0030687 - preribosome, large subunit precursor (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR005155 - UPF0113, PUA domain IPR015947 - PUA-like superfamily IPR036974 - PUA domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049488.1 60S ribosome subunit biogenesis protein NIP7-like protein [Cucumis melo var. makuwa]

7.1e-26

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREYNGVL
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV GDGVVVYSM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY  V+
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREYNGVL

KAF7146724.1 hypothetical protein RHSIM_Rhsim04G0220600 [Rhododendron simsii]

2.1e-25

76.32

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV+GDGVVV+SM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY

XP_004134205.1 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis sativus]

2.1e-25

77.63

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV GDGVVVYSM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY

XP_008438877.1 PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Cucumis melo]

2.1e-25

77.63

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV GDGVVVYSM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY

XP_034684934.1 60S ribosome subunit biogenesis protein NIP7 homolog [Vitis riparia]

2.1e-25

76.32

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV+GDGVVV+SM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L578 60S ribosome subunit biogenesis protein NIP7 homolog

1.0e-25

77.63

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV GDGVVVYSM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY

A0A1S3AXI3 60S ribosome subunit biogenesis protein NIP7 homolog

1.0e-25

77.63

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV GDGVVVYSM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY

A0A438CAP4 60S ribosome subunit biogenesis protein NIP7 homolog

1.0e-25

76.32

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV+GDGVVV+SM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY

A0A5D3CY17 60S ribosome subunit biogenesis protein NIP7 homolog

3.4e-26

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREYNGVL
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV GDGVVVYSM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY  V+
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREYNGVL

A5BNR0 60S ribosome subunit biogenesis protein NIP7 homolog

1.3e-25

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ENIV+GDG+VV+SM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY

SwissProt top hits

e value

%identity

Alignment

Q56P27 60S ribosome subunit biogenesis protein NIP7 homolog

1.4e-21

63.16

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY
        +W+KP +E SFLYGN+VL+ GLGRI EN     GVVVYSM D+PL FGVAAKS QD +K DP  I+V HQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY

Q5R9J1 60S ribosome subunit biogenesis protein NIP7 homolog

1.4e-21

63.16

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY
        +W+KP +E SFLYGN+VL+ GLGRI EN     GVVVYSM D+PL FGVAAKS QD +K DP  I+V HQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY

Q9CXK8 60S ribosome subunit biogenesis protein NIP7 homolog

1.9e-21

63.16

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY
        +W+KP +E SFLYGN+VL+ GLGRI EN     GVVVYSM D+PL FGVAAKS QD +K DP  I+V HQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY

Q9WV50 60S ribosome subunit biogenesis protein NIP7 homolog

1.1e-21

64.47

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY
        +W+KP +E SFLYGN+VL+ GLGRI EN     GVVVYSM DVPL FGVAAKS QD +K DP  I+V HQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY

Q9Y221 60S ribosome subunit biogenesis protein NIP7 homolog

1.4e-21

63.16

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY
        +W+KP +E SFLYGN+VL+ GLGRI EN     GVVVYSM D+PL FGVAAKS QD +K DP  I+V HQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY

Arabidopsis top hits

e value

%identity

Alignment

AT4G15770.1 RNA binding

2.8e-28

73.68

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Query:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY
        +WLKPTSEMSFLYGN+VL+GGLGRI ++IV GDGVVV+SM DVPL FG+AAKS QD +K DPN I+VLHQ D  EY
Subjt:  LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREY

Sequences

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CDS sequence

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TTGTGGCTAAAGCCAACATCGGAGATGTCGTTTTTGTACGGAAACTACGTTTTGAGAGGCGGATTGGGGAGAATTATGGAGAATATTGTATCTGGCGATGGCGTTGTAGT
TTATTCGATGCCCGATGTGCCGTTATGGTTCGGTGTGGCGGCCAAGTCGATGCAGGATAGTAAGAAGTTCGATCCCAATCGAATCATGGTGCTTCATCAAGTTGATTGTA
GGGAGTACAATGGAGTCCTTGAGTATCTT

mRNA sequence

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Protein sequence

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LWLKPTSEMSFLYGNYVLRGGLGRIMENIVSGDGVVVYSMPDVPLWFGVAAKSMQDSKKFDPNRIMVLHQVDCREYNGVLEYL

MS019281 (gene) of Bitter gourd (TR) v1 genome