CuGenDBv2

Gene ID	MS019284
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S21
Genome location	scaffold611:63389..64925
RNA-Seq Expression	MS019284
Synteny	MS019284
Gene Ontology terms	GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001931 - Ribosomal protein S21e IPR018279 - Ribosomal protein S21e, conserved site IPR038579 - Ribosomal protein S21e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]

8.0e-38

97.56

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_004143089.1 40S ribosomal protein S21-2 [Cucumis sativus]

2.7e-38

98.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_022138287.1 40S ribosomal protein S21-2 [Momordica charantia]

3.6e-38

98.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_022138832.1 40S ribosomal protein S21-2-like [Momordica charantia]

1.2e-38

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

XP_022930553.1 40S ribosomal protein S21-2-like [Cucurbita moschata]

2.3e-37

95.12

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GH+DENGIYTGQFSTFALCG+IRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KHD3 40S ribosomal protein S21

1.3e-38

98.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A1S4DSM1 40S ribosomal protein S21

3.9e-38

97.56

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A5D3CXC9 40S ribosomal protein S21

3.9e-38

97.56

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A6J1CCB6 40S ribosomal protein S21

5.9e-39

100

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

A0A6J1CCM4 40S ribosomal protein S21

1.7e-38

98.78

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

SwissProt top hits

e value

%identity

Alignment

P35687 40S ribosomal protein S21

1.7e-35

82.93

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGHVDENG+Y G+F+TFAL GFIRAQGDADSALDRLWQK+KAEV+QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

Q3E902 40S ribosomal protein S21-2

2.0e-36

83.95

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGH+D NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ

Q41852 40S ribosomal protein S21

7.2e-34

79.01

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGH+D NG+Y G F+TFAL GF+RAQGDADS+LDRLWQKKKAE++Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ

Q9M337 40S ribosomal protein S21-1

2.9e-35

79.27

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGH+D NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

Q9SMI2 40S ribosomal protein S21

1.6e-25

69.33

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GHVD N G+YTG ++TFALCGF+R+ G++D+AL+RL  K
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G53890.1 Ribosomal protein S21e

2.1e-36

79.27

Show/hide

Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGH+D NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

AT3G53890.2 Ribosomal protein S21e

2.1e-36

79.27

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGH+D NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

AT5G27700.1 Ribosomal protein S21e

1.4e-37

83.95

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGH+D NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKK E +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQ

Sequences

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CDS sequence

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ATGCAGAACGAAGAGGGAAAGATCACGGAGCTTTACATTCCTAGGAAGTGTTCCGCTACAAATCGGCTCATCACTTCCAAGGACCACGCCTCGGTTCAGATCAACATCGG
TCACGTCGATGAGAATGGCATCTATACAGGCCAATTCTCCACTTTCGCACTTTGTGGTTTCATCCGTGCTCAGGGAGATGCCGACAGTGCTTTGGACAGGCTGTGGCAGA
AGAAGAAAGCCGAAGTTCGTCAACAG

mRNA sequence

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Protein sequence

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MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKAEVRQQ

MS019284 (gene) of Bitter gourd (TR) v1 genome