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MS019291 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019291
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDynein light chain
Genome locationscaffold611:129871..132535
RNA-Seq ExpressionMS019291
SyntenyMS019291
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR019763 - Dynein light chain, type 1/2, conserved site
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022138359.1 dynein light chain 1, cytoplasmic-like [Momordica charantia]6.9e-56100Show/hide
Query:  MSNDAKKSNMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVY
        MSNDAKKSNMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVY
Subjt:  MSNDAKKSNMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVY

Query:  FYLDQKAVLLFKSG
        FYLDQKAVLLFKSG
Subjt:  FYLDQKAVLLFKSG

XP_022930226.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]3.9e-5191.45Show/hide
Query:  MSNDAKKS---NMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAK+S   N MVK+VSEDRKP AVA TGKK+VIKSADMFGDVQKEAVDVAI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKKS---NMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_022959519.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]6.0e-5292.31Show/hide
Query:  MSNDAKKS---NMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAK+S   N+MVKSVSEDRKP AVA TGKK+VIKSADMFGDVQKEA+DVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKKS---NMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_023006429.1 dynein light chain 1, cytoplasmic [Cucurbita maxima]3.9e-5190.6Show/hide
Query:  MSNDAKKS---NMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAK+S   N+MVKSVSEDRKP  +A TGKK+VIKSADMFGDVQKEA+DVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKKS---NMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

XP_023513722.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo]1.8e-5192.31Show/hide
Query:  MSNDAKKS---NMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAK+S   N MVKSVSEDRKP AVA TGKK+VIKSADMFGDVQKEAVDVAI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKKS---NMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

TrEMBL top hitse value%identityAlignment
A0A6J1C9X5 Dynein light chain3.3e-56100Show/hide
Query:  MSNDAKKSNMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVY
        MSNDAKKSNMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVY
Subjt:  MSNDAKKSNMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVY

Query:  FYLDQKAVLLFKSG
        FYLDQKAVLLFKSG
Subjt:  FYLDQKAVLLFKSG

A0A6J1EQC6 Dynein light chain1.9e-5191.45Show/hide
Query:  MSNDAKKS---NMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAK+S   N MVK+VSEDRKP AVA TGKK+VIKSADMFGDVQKEAVDVAI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKKS---NMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1H8A5 Dynein light chain2.9e-5292.31Show/hide
Query:  MSNDAKKS---NMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAK+S   N+MVKSVSEDRKP AVA TGKK+VIKSADMFGDVQKEA+DVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKKS---NMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1KH59 Dynein light chain2.5e-5190.6Show/hide
Query:  MSNDAKKS---NMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAK+S   N MVK+VSEDRKP AVA TGKK+VIKSADMFGDVQKEAVD+AI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKKS---NMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

A0A6J1L253 Dynein light chain1.9e-5190.6Show/hide
Query:  MSNDAKKS---NMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
        MSNDAK+S   N+MVKSVSEDRKP  +A TGKK+VIKSADMFGDVQKEA+DVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH
Subjt:  MSNDAKKS---NMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH

Query:  FVYFYLDQKAVLLFKSG
        FVYFYLDQKAVLLFKSG
Subjt:  FVYFYLDQKAVLLFKSG

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic4.7e-3169.77Show/hide
Query:  KKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++A+D A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q3MHR3 Dynein light chain 2, cytoplasmic4.7e-3170.93Show/hide
Query:  KKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q78P75 Dynein light chain 2, cytoplasmic4.7e-3170.93Show/hide
Query:  KKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q96FJ2 Dynein light chain 2, cytoplasmic4.7e-3170.93Show/hide
Query:  KKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q9D0M5 Dynein light chain 2, cytoplasmic4.7e-3170.93Show/hide
Query:  KKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein1.2e-1358.49Show/hide
Query:  KDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        K +A  +KK+FD  +GP WHCIVG +FGSYVTH T  F+YF +D+  VLLFK+
Subjt:  KDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS

AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.1e-1140Show/hide
Query:  KVVIKSADMFGDVQKEAVDVAIAAFEKHSVE--KDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K +++ +DM   +Q +A+  A  A +   V   K +A +IKKEFD+R+G  W C+VG NFG + TH    F+YF L+    L+FK
Subjt:  KVVIKSADMFGDVQKEAVDVAIAAFEKHSVE--KDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT4G15930.1 Dynein light chain type 1 family protein1.4e-3871.96Show/hide
Query:  KSVSEDRKPS-----AVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKA
        +++ +DR+ S     A    GK+ VIKSADM  D+QKEA+++AI+AFEK+SVEKD+AE IKKEFDK+HG TWHCIVGRNFGSYVTHETNHFVYFYLDQKA
Subjt:  KSVSEDRKPS-----AVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKA

Query:  VLLFKSG
        VLLFKSG
Subjt:  VLLFKSG

AT4G27360.1 Dynein light chain type 1 family protein4.2e-1138.82Show/hide
Query:  KVVIKSADMFGDVQKEAVDVAIAAFEKHSVEK--DVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K V+   DM   ++++A+ +A  A +   V +   +A +IKKEFD+ +G  W CIVG +FGS+VTH +  F++F +    +LLFK
Subjt:  KVVIKSADMFGDVQKEAVDVAIAAFEKHSVEK--DVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT5G20110.1 Dynein light chain type 1 family protein8.2e-1551.16Show/hide
Query:  VVIKSADMFGDVQKEAVDVA---IAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        V I +ADM G +Q  A   A   + + EK S  K +A  +KKEFDK +GP WHCIVG +FGS+VTH T  F+YF +D+  VLLFK+
Subjt:  VVIKSADMFGDVQKEAVDVA---IAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAACGATGCGAAGAAAAGCAATATGATGGTGAAATCAGTATCGGAAGATCGGAAACCGTCGGCGGTGGCGAATACCGGCAAGAAAGTCGTCATAAAGAGTGCCGA
TATGTTCGGAGATGTGCAGAAGGAGGCCGTCGATGTCGCCATAGCTGCATTTGAAAAGCATAGTGTAGAGAAGGATGTAGCGGAGTATATTAAGAAAGAGTTCGATAAGA
GGCATGGACCAACCTGGCATTGCATTGTCGGCCGTAATTTTGGTTCATACGTGACACACGAGACAAACCACTTTGTTTACTTCTACTTGGATCAGAAAGCAGTTTTACTA
TTCAAATCAGGT
mRNA sequenceShow/hide mRNA sequence
ATGAGCAACGATGCGAAGAAAAGCAATATGATGGTGAAATCAGTATCGGAAGATCGGAAACCGTCGGCGGTGGCGAATACCGGCAAGAAAGTCGTCATAAAGAGTGCCGA
TATGTTCGGAGATGTGCAGAAGGAGGCCGTCGATGTCGCCATAGCTGCATTTGAAAAGCATAGTGTAGAGAAGGATGTAGCGGAGTATATTAAGAAAGAGTTCGATAAGA
GGCATGGACCAACCTGGCATTGCATTGTCGGCCGTAATTTTGGTTCATACGTGACACACGAGACAAACCACTTTGTTTACTTCTACTTGGATCAGAAAGCAGTTTTACTA
TTCAAATCAGGT
Protein sequenceShow/hide protein sequence
MSNDAKKSNMMVKSVSEDRKPSAVANTGKKVVIKSADMFGDVQKEAVDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLL
FKSG