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MS019320 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019320
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGATA transcription factor
Genome locationscaffold611:345635..345905
RNA-Seq ExpressionMS019320
SyntenyMS019320
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000679 - Zinc finger, GATA-type
IPR013088 - Zinc finger, NHR/GATA-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150081.1 GATA transcription factor 16 [Cucumis sativus]1.8e-2396.55Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
        +KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERKNKGSSN
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN

XP_008458384.1 PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo]1.8e-2396.55Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
        +KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERKNKGSSN
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN

XP_008458385.1 PREDICTED: GATA transcription factor 16-like isoform X2 [Cucumis melo]1.8e-2396.55Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
        +KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERKNKGSSN
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN

XP_022138518.1 GATA transcription factor 16-like [Momordica charantia]2.7e-24100Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
        RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN

XP_023548663.1 GATA transcription factor 16-like [Cucurbita pepo subsp. pepo]2.3e-2396.55Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
        +KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERK+KGSSN
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN

TrEMBL top hitse value%identityAlignment
A0A0A0KG76 GATA-type domain-containing protein8.5e-2496.55Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
        +KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERKNKGSSN
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN

A0A1S3C8C2 GATA transcription factor 16-like isoform X18.5e-2496.55Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
        +KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERKNKGSSN
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN

A0A1S3C902 GATA transcription factor 16-like isoform X28.5e-2496.55Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
        +KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERKNKGSSN
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN

A0A5D3BXI1 GATA transcription factor 16-like isoform X18.5e-2496.55Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
        +KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG EVERKNKGSSN
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN

A0A6J1CD73 GATA transcription factor 16-like1.3e-24100Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
        RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN

SwissProt top hitse value%identityAlignment
Q6YW48 Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 12.5e-1266.67Show/hide
Query:  KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG
        + C+DC TTKTPLWR GP GPKSLCNACGIR RK RR++     G
Subjt:  KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRG

Q8LC59 GATA transcription factor 231.1e-1272.73Show/hide
Query:  KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLN
        + C++C TTKTP+WRGGP GPKSLCNACGIR RK+RRS LLG++
Subjt:  KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLN

Q8LG10 GATA transcription factor 153.1e-1569.81Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKN
        +K+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKKRR+L+  NR  + ++K+
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKN

Q9FJ10 GATA transcription factor 164.1e-1568.97Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
        +KTCADCGT+KTPLWRGGP GPKSLCNACGIR+RKKRR       G+E  +K K SS+
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN

Q9LIB5 GATA transcription factor 176.3e-1666.67Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSS
        ++TC DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR++ LG+   SE ++KN+ S+
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSS

Arabidopsis top hitse value%identityAlignment
AT3G06740.1 GATA transcription factor 152.2e-1669.81Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKN
        +K+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKKRR+L+  NR  + ++K+
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKN

AT3G16870.1 GATA transcription factor 174.5e-1766.67Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSS
        ++TC DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR++ LG+   SE ++KN+ S+
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSS

AT4G16141.1 GATA type zinc finger transcription factor family protein1.5e-1765.52Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
        +KTC DCGT++TPLWRGGPAGPKSLCNACGI+SRKKR++ LG+ R  +++ K+K ++N
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN

AT5G26930.1 GATA transcription factor 237.9e-1472.73Show/hide
Query:  KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLN
        + C++C TTKTP+WRGGP GPKSLCNACGIR RK+RRS LLG++
Subjt:  KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLN

AT5G49300.1 GATA transcription factor 162.9e-1668.97Show/hide
Query:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN
        +KTCADCGT+KTPLWRGGP GPKSLCNACGIR+RKKRR       G+E  +K K SS+
Subjt:  RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGAAGACCTGCGCCGATTGCGGGACGACCAAAACTCCTCTATGGCGCGGAGGTCCGGCCGGCCCTAAGTCTCTCTGCAATGCGTGTGGGATCCGAAGCCGGAAAAAGAG
GAGGTCGCTTCTAGGTTTGAACAGAGGGAGCGAAGTGGAGAGAAAAAACAAAGGAAGCAGTAAC
mRNA sequenceShow/hide mRNA sequence
AGGAAGACCTGCGCCGATTGCGGGACGACCAAAACTCCTCTATGGCGCGGAGGTCCGGCCGGCCCTAAGTCTCTCTGCAATGCGTGTGGGATCCGAAGCCGGAAAAAGAG
GAGGTCGCTTCTAGGTTTGAACAGAGGGAGCGAAGTGGAGAGAAAAAACAAAGGAAGCAGTAAC
Protein sequenceShow/hide protein sequence
RKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGSEVERKNKGSSN