CuGenDBv2

Gene ID	MS019340
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Genome location	scaffold611:483806..484138
RNA-Seq Expression	MS019340
Synteny	MS019340
Gene Ontology terms	GO:0009536 - plastid (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ARC98242.1 hypothetical protein RF2 [Potentilla lineata]

1.9e-18

54.1

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE
        M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT         + D     ++I  S +    +S+     ++IY+ KKS N+ GSYLYKWYFE
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE

Query:  LGTNMKKLPTFLYLLNCSLGTI
        LGT+MKKL   LYLL+CS G++
Subjt:  LGTNMKKLPTFLYLLNCSLGTI

ARD03809.1 hypothetical protein RF2 [Potentilla micropetala]

1.9e-18

54.1

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE
        M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT         + D     ++I  S +    +S+     ++IY+ KKS N+ GSYLYKWYFE
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE

Query:  LGTNMKKLPTFLYLLNCSLGTI
        LGT+MKKL   LYLL+CS G++
Subjt:  LGTNMKKLPTFLYLLNCSLGTI

QVG61118.1 hypothetical chloroplast RF2 [Potentilla lineata]

1.9e-18

54.1

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE
        M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT         + D     ++I  S +    +S+     ++IY+ KKS N+ GSYLYKWYFE
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE

Query:  LGTNMKKLPTFLYLLNCSLGTI
        LGT+MKKL   LYLL+CS G++
Subjt:  LGTNMKKLPTFLYLLNCSLGTI

YP_009687062.1 hypothetical protein RF2 [Klainedoxa gabonensis]

2.4e-18

51.64

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT-ICDPKYDRFKIMGSFSISHRMSYGMNIYL-------------KKSFNKLGSYLYKWYFE
        M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT     +    +  G        +   N++L             KKS N+  SYLYKWYFE
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT-ICDPKYDRFKIMGSFSISHRMSYGMNIYL-------------KKSFNKLGSYLYKWYFE

Query:  LGTNMKKLPTFLYLLNCSLGTI
        LGT+MKKL  FLYLL+CS G++
Subjt:  LGTNMKKLPTFLYLLNCSLGTI

YP_009939732.1 Ycf2 [[Argentina] phanerophlebia]

1.9e-18

54.1

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE
        M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT         + D     ++I  S +    +S+     ++IY+ KKS N+ GSYLYKWYFE
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE

Query:  LGTNMKKLPTFLYLLNCSLGTI
        LGT+MKKL   LYLL+CS G++
Subjt:  LGTNMKKLPTFLYLLNCSLGTI

TrEMBL top hits

e value

%identity

Alignment

A0A1V0IP46 Protein Ycf2

9.0e-19

54.1

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE
        M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT         + D     ++I  S +    +S+     ++IY+ KKS N+ GSYLYKWYFE
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE

Query:  LGTNMKKLPTFLYLLNCSLGTI
        LGT+MKKL   LYLL+CS G++
Subjt:  LGTNMKKLPTFLYLLNCSLGTI

A0A1V0J4Y9 Protein Ycf2

9.0e-19

54.1

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE
        M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT         + D     ++I  S +    +S+     ++IY+ KKS N+ GSYLYKWYFE
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE

Query:  LGTNMKKLPTFLYLLNCSLGTI
        LGT+MKKL   LYLL+CS G++
Subjt:  LGTNMKKLPTFLYLLNCSLGTI

A0A5B8GW68 Protein Ycf2

1.2e-18

51.64

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT-ICDPKYDRFKIMGSFSISHRMSYGMNIYL-------------KKSFNKLGSYLYKWYFE
        M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT     +    +  G        +   N++L             KKS N+  SYLYKWYFE
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT-ICDPKYDRFKIMGSFSISHRMSYGMNIYL-------------KKSFNKLGSYLYKWYFE

Query:  LGTNMKKLPTFLYLLNCSLGTI
        LGT+MKKL  FLYLL+CS G++
Subjt:  LGTNMKKLPTFLYLLNCSLGTI

A0A6N2KJM8 Uncharacterized protein (Fragment)

4.0e-19

57.8

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQTICDPKYDRFKIMGSFSISHRMSYGMNIYL-KKSFNKLGSYLYKWYFELGTNMKKLPTFLY
        M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT          +  +  +S+     ++IY+ KKS N+  SYLYKWYFELGT+MKKL   LY
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQTICDPKYDRFKIMGSFSISHRMSYGMNIYL-KKSFNKLGSYLYKWYFELGTNMKKLPTFLY

Query:  LLNCSLGTI
        LL+CS G+I
Subjt:  LLNCSLGTI

A0A7L7S722 Protein Ycf2

9.0e-19

54.1

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE
        M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT         + D     ++I  S +    +S+     ++IY+ KKS N+ GSYLYKWYFE
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE

Query:  LGTNMKKLPTFLYLLNCSLGTI
        LGT+MKKL   LYLL+CS G++
Subjt:  LGTNMKKLPTFLYLLNCSLGTI

SwissProt top hits

e value

%identity

Alignment

A4GYV4 Protein Ycf2

2.7e-20

51.22

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQTICDPKYDRFKIMGSFSISHRM--SYGMNIYL-------------KKSFNKLGSYLYKWYF
        M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT  D +     +     + +++  +   N++L             KKS N+  SYLYKWYF
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQTICDPKYDRFKIMGSFSISHRM--SYGMNIYL-------------KKSFNKLGSYLYKWYF

Query:  ELGTNMKKLPTFLYLLNCSLGTI
        ELGT+MKKL   LYLL+CS G+I
Subjt:  ELGTNMKKLPTFLYLLNCSLGTI

B1NWJ3 Protein Ycf2

9.3e-21

51.64

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT-ICDPKYDRFKIMGSFSISHRMSYGMNIYL-------------KKSFNKLGSYLYKWYFE
        M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT     +    +  G F      +   N++L             KKS N+  SYLYKWYFE
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT-ICDPKYDRFKIMGSFSISHRMSYGMNIYL-------------KKSFNKLGSYLYKWYFE

Query:  LGTNMKKLPTFLYLLNCSLGTI
        LGT+MKKL   LYLL+CS G++
Subjt:  LGTNMKKLPTFLYLLNCSLGTI

P61241 Protein Ycf2

7.8e-20

52.46

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYLKKSFNKLG-SYLYKWYFE
        M SN RDLVAL NE LSISITQKK II TN IRS+L+RQT         + D     ++I  SF+    +S+     ++ Y+KK   K G SYLYKWYFE
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYLKKSFNKLG-SYLYKWYFE

Query:  LGTNMKKLPTFLYLLNCSLGTI
        LGT++KKL T LYLL+CS G++
Subjt:  LGTNMKKLPTFLYLLNCSLGTI

Q14F97 Protein Ycf2

2.7e-20

51.22

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQTICDPKYDRFKIMGSFSISHRM--SYGMNIYL-------------KKSFNKLGSYLYKWYF
        M SN+RDLVAL NE LSISITQKK II TNIIRS+L+RQT  D +     +     + +++  +   N++L             KKS N+  SYLYKWYF
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQTICDPKYDRFKIMGSFSISHRM--SYGMNIYL-------------KKSFNKLGSYLYKWYF

Query:  ELGTNMKKLPTFLYLLNCSLGTI
        ELGT+MKKL   LYLL+CS G+I
Subjt:  ELGTNMKKLPTFLYLLNCSLGTI

Q2QD30 Protein Ycf2

7.8e-20

51.64

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE
        M SN+RDLVAL NE LSISITQ+K II TNIIRS+L+RQT         + D     ++I  + +    +S+     ++IY+ KKS N+ GSYLY WYFE
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE

Query:  LGTNMKKLPTFLYLLNCSLGTI
        L T+MKKL   LYLLNCS G++
Subjt:  LGTNMKKLPTFLYLLNCSLGTI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

2.3e-19

50.82

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE
        M S+ RDLVAL NE LSISITQKK II TN IRS+L+RQT         + D     ++I  + +    IS+     ++IY+ KKS N+  SYLYKWYFE
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE

Query:  LGTNMKKLPTFLYLLNCSLGTI
        LGT+MKK    LYLL+CS G++
Subjt:  LGTNMKKLPTFLYLLNCSLGTI

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

2.3e-19

50.82

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Query:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE
        M S+ RDLVAL NE LSISITQKK II TN IRS+L+RQT         + D     ++I  + +    IS+     ++IY+ KKS N+  SYLYKWYFE
Subjt:  MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQT---------ICDPKYDRFKIMGSFS----ISHRMSYGMNIYL-KKSFNKLGSYLYKWYFE

Query:  LGTNMKKLPTFLYLLNCSLGTI
        LGT+MKK    LYLL+CS G++
Subjt:  LGTNMKKLPTFLYLLNCSLGTI

Sequences

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CDS sequence

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ATGGATTCTAATATACGAGATCTTGTAGCACTTATCAATGAGGTCCTATCGATTAGTATTACGCAGAAGAAACCAATTATAAAAACTAATATAATTAGATCTTCTCTTTA
TAGACAAACTATTTGCGATCCCAAGTATGATCGTTTCAAGATTATGGGATCCTTTTCTATATCACATAGGATGAGCTATGGCATGAATATTTATCTTAAAAAATCATTTA
ACAAATTGGGTTCTTATTTATACAAATGGTACTTCGAACTTGGAACTAACATGAAGAAATTACCAACATTTCTTTATCTTTTGAATTGTAGTTTGGGCACAATT

mRNA sequence

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Protein sequence

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MDSNIRDLVALINEVLSISITQKKPIIKTNIIRSSLYRQTICDPKYDRFKIMGSFSISHRMSYGMNIYLKKSFNKLGSYLYKWYFELGTNMKKLPTFLYLLNCSLGTI

MS019340 (gene) of Bitter gourd (TR) v1 genome