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MS019390 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019390
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationscaffold611:958982..959242
RNA-Seq ExpressionMS019390
SyntenyMS019390
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW33074.1 putative ribonuclease H protein [Vitis vinifera]8.5e-1447.13Show/hide
Query:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG
        MK+++WN RGLG K KRR+VK+FL  EKPDV++  E+KKEE +R  + S+   R  D A + + GA GG+L++W  + +   EVV G
Subjt:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG

RVW74124.1 hypothetical protein CK203_052225 [Vitis vinifera]1.3e-1448.28Show/hide
Query:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG
        MK+++WN RGLG K KRR+VK+FL +EKPDV++I E+KKEE +R  + S+   R  D A + + GA GG+L++W  + ++  EVV G
Subjt:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG

RVW95846.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]3.8e-1447.13Show/hide
Query:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG
        MK+++WNVRGLG  +KRR++K+FL +EKPDV++I E+KKE+ +R L+ S+   R  D   + + GAFGG+L +W  + + + EVV G
Subjt:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG

RVX11275.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]2.9e-1449.43Show/hide
Query:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG
        MK+++WN RGLG K KRR+VK FL  EKPDV++I E+KKEE +R L+ S+   R  D A + + GA GG+L++W  + ++  EVV G
Subjt:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG

XP_034710512.1 uncharacterized protein LOC117933236 [Vitis riparia]1.0e-1449.43Show/hide
Query:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG
        MK+++WN RGLG K KRR+VK+FL  EKPDV++I E+KKEE +R L+ S+   R  D A + + GA GG+L++W  + ++  EVV G
Subjt:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG

TrEMBL top hitse value%identityAlignment
A0A438DC91 Putative ribonuclease H protein4.1e-1447.13Show/hide
Query:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG
        MK+++WN RGLG K KRR+VK+FL  EKPDV++  E+KKEE +R  + S+   R  D A + + GA GG+L++W  + +   EVV G
Subjt:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG

A0A438DRE2 LINE-1 retrotransposable element ORF2 protein4.1e-1447.13Show/hide
Query:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG
        MK+++WN RGLG K KRR+VK+FL  EKPDV++  E+KKEE +R  + S+   R  D A + + GA GG+L++W  + +   EVV G
Subjt:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG

A0A438GPK7 Uncharacterized protein6.3e-1548.28Show/hide
Query:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG
        MK+++WN RGLG K KRR+VK+FL +EKPDV++I E+KKEE +R  + S+   R  D A + + GA GG+L++W  + ++  EVV G
Subjt:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG

A0A438IGH3 Transposon TX1 uncharacterized 149 kDa protein1.8e-1447.13Show/hide
Query:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG
        MK+++WNVRGLG  +KRR++K+FL +EKPDV++I E+KKE+ +R L+ S+   R  D   + + GAFGG+L +W  + + + EVV G
Subjt:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG

A0A438JQQ0 LINE-1 retrotransposable element ORF2 protein1.4e-1449.43Show/hide
Query:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG
        MK+++WN RGLG K KRR+VK FL  EKPDV++I E+KKEE +R L+ S+   R  D A + + GA GG+L++W  + ++  EVV G
Subjt:  MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTTGTTGCTTGGAATGTTAGAGGTTTGGGGGGAAAAGACAAGAGAAGGTTAGTGAAGGAGTTTCTGCTGATAGAAAAGCCGGACGTGATGATCATTGTGGAATC
TAAAAAGGAAGAGTATAACAGAGTTCTTATCAAGAGTATTGGGAGAGGTAGATTTGTGGACTCGGCGGGTATTGGTTCTATTGGAGCGTTTGGAGGGGTTCTTTTACTGT
GGTATAGGCGAGCAGTTAAAGAAGTGGAGGTCGTGAGGGGT
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTTGTTGCTTGGAATGTTAGAGGTTTGGGGGGAAAAGACAAGAGAAGGTTAGTGAAGGAGTTTCTGCTGATAGAAAAGCCGGACGTGATGATCATTGTGGAATC
TAAAAAGGAAGAGTATAACAGAGTTCTTATCAAGAGTATTGGGAGAGGTAGATTTGTGGACTCGGCGGGTATTGGTTCTATTGGAGCGTTTGGAGGGGTTCTTTTACTGT
GGTATAGGCGAGCAGTTAAAGAAGTGGAGGTCGTGAGGGGT
Protein sequenceShow/hide protein sequence
MKVVAWNVRGLGGKDKRRLVKEFLLIEKPDVMIIVESKKEEYNRVLIKSIGRGRFVDSAGIGSIGAFGGVLLLWYRRAVKEVEVVRG