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MS019424 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019424
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionML domain-containing protein
Genome locationscaffold28:329244..331992
RNA-Seq ExpressionMS019424
SyntenyMS019424
Gene Ontology termsGO:0015918 - sterol transport (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR003172 - MD-2-related lipid-recognition domain
IPR014756 - Immunoglobulin E-set
IPR039670 - Sterol transport protein NPC2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136524.1 MD-2-related lipid-recognition protein ROSY1 [Cucumis sativus]4.9e-7387.1Show/hide
Query:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEP FQMKLIF FL++LC   QFS +T +QLCDETA YDI VKGVEISP+P+VRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
Subjt:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS
        Y  GDFAL PLRTPLAFF PGSYHMQI IVDGDDNKLTCFGFDYELVIASLFGDS
Subjt:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS

XP_008442939.1 PREDICTED: uncharacterized protein LOC103486693 [Cucumis melo]3.8e-7387.74Show/hide
Query:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEP+FQMKLIF FL++LC   QFS AT VQLCDETA YDI VKGVEISPSPIVRGHPTNM FNL+IG PIIAGKMVVDISYFGWHIYSDSHDICVETSCP
Subjt:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS
        Y  GDFAL PLRTPLAFF PGSYHMQI IVDGDDNKLTCFGFDYELVIASLFGDS
Subjt:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS

XP_022151451.1 uncharacterized protein LOC111019382 [Momordica charantia]4.8e-8499.35Show/hide
Query:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNM FNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
Subjt:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS
        YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS
Subjt:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS

XP_022983145.1 uncharacterized protein LOC111481784 [Cucurbita maxima]3.9e-7084.52Show/hide
Query:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEP+  MKLIF  L++LC V QFS AT VQLCDETA YDIMVKGV+ISPSPIVRG P  M FNLIIGKPIIAGKMVVDISYFGWH+Y DSHDICVETSCP
Subjt:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS
        YSFGDFAL PL+TPLAFF PGSYHMQI IVDGDDNKL CFGFDYELVIASLFGDS
Subjt:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS

XP_038905833.1 uncharacterized protein LOC120091785 [Benincasa hispida]2.2e-7387.74Show/hide
Query:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEP+FQMKLIF  L++LC V QFS AT VQLCDETA YD+ VKGVEISPSPIVRGHPTNM FNLIIGKPIIAGKMVVDISYFGWHIYS+SHDICVETSCP
Subjt:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS
        YSFGDFAL P RTPLAFF PGSYHMQI IVDGDDNKLTCF FDYELVIASLFGDS
Subjt:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS

TrEMBL top hitse value%identityAlignment
A0A1S3B7M8 uncharacterized protein LOC1034866931.8e-7387.74Show/hide
Query:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEP+FQMKLIF FL++LC   QFS AT VQLCDETA YDI VKGVEISPSPIVRGHPTNM FNL+IG PIIAGKMVVDISYFGWHIYSDSHDICVETSCP
Subjt:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS
        Y  GDFAL PLRTPLAFF PGSYHMQI IVDGDDNKLTCFGFDYELVIASLFGDS
Subjt:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS

A0A5D3DP69 Putative phosphatidylglycerol/phosphatidylinositol transfer protein1.8e-7387.74Show/hide
Query:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEP+FQMKLIF FL++LC   QFS AT VQLCDETA YDI VKGVEISPSPIVRGHPTNM FNL+IG PIIAGKMVVDISYFGWHIYSDSHDICVETSCP
Subjt:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS
        Y  GDFAL PLRTPLAFF PGSYHMQI IVDGDDNKLTCFGFDYELVIASLFGDS
Subjt:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS

A0A6J1DDJ6 uncharacterized protein LOC1110193822.3e-8499.35Show/hide
Query:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNM FNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
Subjt:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS
        YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS
Subjt:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS

A0A6J1FAL9 uncharacterized protein LOC1114423328.0e-6982.58Show/hide
Query:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        ME +  MKLI   L++LC V QFS AT VQLCDETA YDIMVKGV+ISPSPIVRG P NM FNLIIGKPI+AGKMVVDISYFGWH+Y DSHDICVETSCP
Subjt:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS
        YSFGDFAL PL+TPLAFF PGSYHMQI +VDGDDNKL CFGFDYELVIASLFGDS
Subjt:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS

A0A6J1J1A9 uncharacterized protein LOC1114817841.9e-7084.52Show/hide
Query:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP
        MEP+  MKLIF  L++LC V QFS AT VQLCDETA YDIMVKGV+ISPSPIVRG P  M FNLIIGKPIIAGKMVVDISYFGWH+Y DSHDICVETSCP
Subjt:  MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCP

Query:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS
        YSFGDFAL PL+TPLAFF PGSYHMQI IVDGDDNKL CFGFDYELVIASLFGDS
Subjt:  YSFGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G11780.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein2.3e-2838.85Show/hide
Query:  YLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYSFGDFALTPLRTPL
        Y  LV+    AT V  CD    Y++ V+GV+I+P PI RG P     +      I +GK+V+++SYFGWHI+S++HD+C ETSCP + GDF +   +   
Subjt:  YLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYSFGDFALTPLRTPL

Query:  AFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGD
         +  PGSY +++ ++DG   +LTC  F +++   S   D
Subjt:  AFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGD

AT3G11780.2 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein6.3e-2636.31Show/hide
Query:  YLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYSFGDFALT-----P
        Y  LV+    AT V  CD    Y++ V+GV+I+P PI RG P     +      I +GK+V+++SYFGWHI+S++HD+C ETSCP + GDF +      P
Subjt:  YLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYSFGDFALT-----P

Query:  LRTP-------------LAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGD
          TP               F   GSY +++ ++DG   +LTC  F +++   S   D
Subjt:  LRTP-------------LAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGD

AT3G44100.1 MD-2-related lipid recognition domain-containing protein3.5e-1632.14Show/hide
Query:  IYLCLVTQFSL----ATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYSFGDFALTP
        + L L++ F L    AT    CD+     + V GV+ISP P+V G           G+ I  GK+V+ + Y G  +++++HD+C ET+CP + G F L+ 
Subjt:  IYLCLVTQFSL----ATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYSFGDFALTP

Query:  LRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIAS
         +T  +   PG+Y +++ I D +  +LTC  F +++ + S
Subjt:  LRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIAS

AT5G06480.1 Immunoglobulin E-set superfamily protein1.2e-2736.84Show/hide
Query:  MKLIFAFL----IYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYS
        M  IFA L    ++L L+    +A  V  C+E A Y++ VK V+ISP+PI  G P     +   G+ I  GK+V+++SYFGWH++S++HD+C ETSCP  
Subjt:  MKLIFAFL----IYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYS

Query:  FGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGD
         GDF +   +    +  PGSY +++ ++D    +LTC  F +++ + +   D
Subjt:  FGDFALTPLRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCCTCTTTTCAGATGAAGCTAATTTTCGCGTTTCTTATCTATCTGTGTCTGGTTACACAGTTCTCTCTAGCCACTCCAGTCCAACTCTGCGATGAGACAGCTAC
GTATGATATCATGGTGAAAGGAGTAGAGATATCTCCCAGCCCCATAGTTCGTGGCCACCCAACAAATATGATCTTCAATCTAATTATAGGTAAGCCAATCATTGCAGGAA
AAATGGTAGTTGATATTTCATATTTCGGATGGCACATATATAGTGACAGCCATGACATTTGTGTCGAAACATCTTGCCCTTATTCGTTTGGTGATTTTGCACTCACCCCG
TTGCGAACACCTCTCGCATTCTTTTTTCCTGGGTCATATCATATGCAGATAATGATTGTTGATGGAGATGATAATAAACTTACATGCTTTGGCTTTGATTATGAATTGGT
GATTGCATCACTATTTGGAGATAGC
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCCTCTTTTCAGATGAAGCTAATTTTCGCGTTTCTTATCTATCTGTGTCTGGTTACACAGTTCTCTCTAGCCACTCCAGTCCAACTCTGCGATGAGACAGCTAC
GTATGATATCATGGTGAAAGGAGTAGAGATATCTCCCAGCCCCATAGTTCGTGGCCACCCAACAAATATGATCTTCAATCTAATTATAGGTAAGCCAATCATTGCAGGAA
AAATGGTAGTTGATATTTCATATTTCGGATGGCACATATATAGTGACAGCCATGACATTTGTGTCGAAACATCTTGCCCTTATTCGTTTGGTGATTTTGCACTCACCCCG
TTGCGAACACCTCTCGCATTCTTTTTTCCTGGGTCATATCATATGCAGATAATGATTGTTGATGGAGATGATAATAAACTTACATGCTTTGGCTTTGATTATGAATTGGT
GATTGCATCACTATTTGGAGATAGC
Protein sequenceShow/hide protein sequence
MEPSFQMKLIFAFLIYLCLVTQFSLATPVQLCDETATYDIMVKGVEISPSPIVRGHPTNMIFNLIIGKPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYSFGDFALTP
LRTPLAFFFPGSYHMQIMIVDGDDNKLTCFGFDYELVIASLFGDS