CuGenDBv2

Gene ID	MS019441
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Genome location	scaffold28:542890..543089
RNA-Seq Expression	MS019441
Synteny	MS019441
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAF3449800.1 hypothetical protein FNV43_RR05878 [Rhamnella rubrinervis]

1.7e-22

85.07

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL
        NEGGS LYKWYF+LGTS+KKLT LLYLLSCSAGS+ QDLWSL  LDEKNGITSY +VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL

QGT34013.1 hypothetical protein RF2 [Chamaesium viridiflorum]

2.2e-22

82.61

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY---IVENDSDLVHGL
        NEGGS LYKWYF+LGTS+KKLTRLLYLLSCSAGS+ QDLWSL   DEKNGITSY   +VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY---IVENDSDLVHGL

YP_009462572.1 hypothetical chloroplast RF21 [Boehmeria spicata]

2.2e-22

83.58

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL
        NEGGS LYKWYF+LGT +KKLT LLYLLSCSAGS+ QDLWSL +LDEKNGITSY +VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL

YP_009462671.1 hypothetical chloroplast RF21 [Boehmeria umbrosa]

2.2e-22

83.58

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL
        NEGGS LYKWYF+LGT +KKLT LLYLLSCSAGS+ QDLWSL +LDEKNGITSY +VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL

YP_009572313.1 hypothetical chloroplast RF21 [Debregeasia orientalis]

2.9e-22

83.58

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL
        NEG S LYKWYF+LGTS+KKLT LLYLLSCSAGS+ QDLWSL +LDEKNGITSY +VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL

TrEMBL top hits

e value

%identity

Alignment

A0A2H4T233 Protein Ycf2

1.4e-22

85.07

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL
        N+GGS LYKWYF+LGTS+KKLT LLYLLSCSAGS+VQDLWSLS  DEKNGITSY +VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL

A0A2K9VR25 Protein Ycf2

1.1e-22

83.58

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL
        NEGGS LYKWYF+LGT +KKLT LLYLLSCSAGS+ QDLWSL +LDEKNGITSY +VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL

A0A2K9VRD0 Protein Ycf2

1.1e-22

83.58

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL
        NEGGS LYKWYF+LGT +KKLT LLYLLSCSAGS+ QDLWSL +LDEKNGITSY +VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL

A0A650DN69 Protein Ycf2

1.1e-22

82.61

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY---IVENDSDLVHGL
        NEGGS LYKWYF+LGTS+KKLTRLLYLLSCSAGS+ QDLWSL   DEKNGITSY   +VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY---IVENDSDLVHGL

A0A6B9TR94 Protein Ycf2

1.4e-22

83.58

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL
        NEG S LYKWYF+LGTS+KKLT LLYLLSCSAGS+ QDLWSL +LDEKNGITSY +VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL

SwissProt top hits

e value

%identity

Alignment

Q09WV7 Protein Ycf2

8.4e-25

83.58

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL
        NEG S LYKWYF+LGTS+KKLT LLYLLSCSAGS+ QDLWSL  LDEKNGITSY +VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL

Q3C1N4 Protein Ycf2

5.5e-24

82.09

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL
        NEG S LYKWYF+LGTS+K+LT LLYLLSCSAGS+ QDLWSLS  DEKNGITSY +VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL

Q68RU4 Protein Ycf2

1.4e-24

83.58

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL
        NEG S LYKWYF+LGTS+KKLT LLYLLSCSAGS+ QDLWSL R DEKNGITSY +VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL

Q8S8U1 Protein Ycf2 B

5.5e-24

82.09

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL
        NEG S LYKWYF+LGTS+K+LT LLYLLSCSAGS+ QDLWSLS  DEKNGITSY +VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL

Q8S8V2 Protein Ycf2 A

5.5e-24

82.09

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL
        NEG S LYKWYF+LGTS+K+LT LLYLLSCSAGS+ QDLWSLS  DEKNGITSY +VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

3.6e-23

79.1

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL
        NEG S LYKWYF+LGTS+KK T LLYLLSCSAGS+ QDLWSL   DEKN ITSY  VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

3.6e-23

79.1

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Query:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL
        NEG S LYKWYF+LGTS+KK T LLYLLSCSAGS+ QDLWSL   DEKN ITSY  VENDSDLVHGL
Subjt:  NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSY-IVENDSDLVHGL

Sequences

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CDS sequence

Show/hide CDS sequence

AACGAAGGGGGTTCTGATTTGTACAAATGGTACTTCAAACTTGGAACGAGCATAAAGAAATTAACGAGACTTCTTTATCTTTTGAGTTGTTCTGCCGGTTCGATCGTTCA
AGACCTTTGGTCTCTATCCAGACTCGATGAAAAAAATGGGATCACTTCTTATATAGTTGAGAATGATTCTGATCTAGTTCATGGCCTA

mRNA sequence

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AACGAAGGGGGTTCTGATTTGTACAAATGGTACTTCAAACTTGGAACGAGCATAAAGAAATTAACGAGACTTCTTTATCTTTTGAGTTGTTCTGCCGGTTCGATCGTTCA
AGACCTTTGGTCTCTATCCAGACTCGATGAAAAAAATGGGATCACTTCTTATATAGTTGAGAATGATTCTGATCTAGTTCATGGCCTA

Protein sequence

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NEGGSDLYKWYFKLGTSIKKLTRLLYLLSCSAGSIVQDLWSLSRLDEKNGITSYIVENDSDLVHGL

MS019441 (gene) of Bitter gourd (TR) v1 genome