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MS019467 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019467
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDYW_deaminase domain-containing protein
Genome locationscaffold28:739906..740090
RNA-Seq ExpressionMS019467
SyntenyMS019467
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044204.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.1e-1271.67Show/hide
Query:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDLD
        MTILTN SSPVFS+AL+IKN  SN ++ FKQL H+H RL RL L QDNYLLN ILCC LD
Subjt:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDLD

KGN58718.1 hypothetical protein Csa_001575 [Cucumis sativus]4.2e-1270Show/hide
Query:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDLD
        MTILT+ +SPVFS+ALEIKN  SN ++ F QL H+H RL RL LDQDNYLLN ILCC LD
Subjt:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDLD

XP_008442361.1 PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Cucumis melo]1.1e-1271.67Show/hide
Query:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDLD
        MTILTN SSPVFS+AL+IKN  SN ++ FKQL H+H RL RL L QDNYLLN ILCC LD
Subjt:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDLD

XP_022144577.1 putative pentatricopeptide repeat-containing protein At3g08820 [Momordica charantia]2.2e-1376.27Show/hide
Query:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDL
        MTILTN SSPVFS+ALEIKN  SN +H FK L  VH RL RLDLDQDNYLLN ILCC L
Subjt:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDL

XP_038905109.1 putative pentatricopeptide repeat-containing protein At3g08820 [Benincasa hispida]4.1e-1578.33Show/hide
Query:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDLD
        MTILTN SSPVFS+ALEIKN  SN ++ FKQL H+H RL RLDLDQDNYLLNTILCC LD
Subjt:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDLD

TrEMBL top hitse value%identityAlignment
A0A0A0LA44 DYW_deaminase domain-containing protein2.0e-1270Show/hide
Query:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDLD
        MTILT+ +SPVFS+ALEIKN  SN ++ F QL H+H RL RL LDQDNYLLN ILCC LD
Subjt:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDLD

A0A1S3B518 putative pentatricopeptide repeat-containing protein At3g088205.4e-1371.67Show/hide
Query:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDLD
        MTILTN SSPVFS+AL+IKN  SN ++ FKQL H+H RL RL L QDNYLLN ILCC LD
Subjt:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDLD

A0A5A7TLY9 Putative pentatricopeptide repeat-containing protein5.4e-1371.67Show/hide
Query:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDLD
        MTILTN SSPVFS+AL+IKN  SN ++ FKQL H+H RL RL L QDNYLLN ILCC LD
Subjt:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDLD

A0A5D3DMV5 Putative pentatricopeptide repeat-containing protein5.4e-1371.67Show/hide
Query:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDLD
        MTILTN SSPVFS+AL+IKN  SN ++ FKQL H+H RL RL L QDNYLLN ILCC LD
Subjt:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDLD

A0A6J1CU24 putative pentatricopeptide repeat-containing protein At3g088201.1e-1376.27Show/hide
Query:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDL
        MTILTN SSPVFS+ALEIKN  SN +H FK L  VH RL RLDLDQDNYLLN ILCC L
Subjt:  MTILTNASSPVFSQALEIKNCPSNDIHGFKQL-HVHTRLPRLDLDQDNYLLNTILCCDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCATCCTCACGAATGCTTCTTCTCCTGTCTTCTCCCAGGCATTAGAGATTAAGAATTGCCCCAGTAATGATATTCATGGCTTCAAACAGCTCCATGTCCACACGCG
TCTTCCTCGTCTTGACCTCGACCAAGATAACTACCTCCTTAATACGATTCTGTGTTGCGACTTAGATATG
mRNA sequenceShow/hide mRNA sequence
ATGACCATCCTCACGAATGCTTCTTCTCCTGTCTTCTCCCAGGCATTAGAGATTAAGAATTGCCCCAGTAATGATATTCATGGCTTCAAACAGCTCCATGTCCACACGCG
TCTTCCTCGTCTTGACCTCGACCAAGATAACTACCTCCTTAATACGATTCTGTGTTGCGACTTAGATATG
Protein sequenceShow/hide protein sequence
MTILTNASSPVFSQALEIKNCPSNDIHGFKQLHVHTRLPRLDLDQDNYLLNTILCCDLDM