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MS019470 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019470
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold28:746226..746357
RNA-Seq ExpressionMS019470
SyntenyMS019470
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027873.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]9.0e-1272.73Show/hide
Query:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        +G++PDENTFIGLLCGC HG FVDE RRYF+++KRVFS TPS++
Subjt:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

XP_022144577.1 putative pentatricopeptide repeat-containing protein At3g08820 [Momordica charantia]9.0e-1272.73Show/hide
Query:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        +G+QPDENTFIGLLCGC HG FV+E R+YFD++KRVFS TPS++
Subjt:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

XP_022951275.1 putative pentatricopeptide repeat-containing protein At3g08820 [Cucurbita moschata]2.6e-1170.45Show/hide
Query:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        +G++PDENTFIGLLCGC HG FVDE RRYF+++K+VFS TPS++
Subjt:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

XP_022971519.1 putative pentatricopeptide repeat-containing protein At3g08820 [Cucurbita maxima]9.0e-1272.73Show/hide
Query:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        +G++PDENTFIGLLCGC HG FVDE RRYF+++KRVFS TPS++
Subjt:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

XP_023538778.1 putative pentatricopeptide repeat-containing protein At3g08820 [Cucurbita pepo subsp. pepo]9.0e-1272.73Show/hide
Query:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        +G++PDENTFIGLLCGC HG FVDE RRYF+++KRVFS TPS++
Subjt:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

TrEMBL top hitse value%identityAlignment
A0A5A7TLY9 Putative pentatricopeptide repeat-containing protein1.8e-1065.91Show/hide
Query:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        +G++PDENTFIGLLCGC HG FV+E R++F+ +KRVFS TPS++
Subjt:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

A0A5D3DMV5 Putative pentatricopeptide repeat-containing protein1.8e-1065.91Show/hide
Query:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        +G++PDENTFIGLLCGC HG FV+E R++F+ +KRVFS TPS++
Subjt:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

A0A6J1CU24 putative pentatricopeptide repeat-containing protein At3g088204.3e-1272.73Show/hide
Query:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        +G+QPDENTFIGLLCGC HG FV+E R+YFD++KRVFS TPS++
Subjt:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

A0A6J1GIB8 putative pentatricopeptide repeat-containing protein At3g088201.3e-1170.45Show/hide
Query:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        +G++PDENTFIGLLCGC HG FVDE RRYF+++K+VFS TPS++
Subjt:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

A0A6J1I8T1 putative pentatricopeptide repeat-containing protein At3g088204.3e-1272.73Show/hide
Query:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        +G++PDENTFIGLLCGC HG FVDE RRYF+++KRVFS TPS++
Subjt:  NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

SwissProt top hitse value%identityAlignment
Q8LK93 Pentatricopeptide repeat-containing protein At2g02980, chloroplastic8.4e-0547.62Show/hide
Query:  VQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        VQPDE TF+GLL  C+H   V+E R+YF  +   F   PS++
Subjt:  VQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

Q9LN01 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic8.4e-0541.86Show/hide
Query:  GVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        G+QPD+ TF+GLL  C+H   +D  R  F T+ + +  TP L+
Subjt:  GVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

Q9SJ73 Pentatricopeptide repeat-containing protein At2g048603.8e-0546.51Show/hide
Query:  GVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        G++PDE TF+G+L  C HG FVDE +  F  + + F  +P+LQ
Subjt:  GVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

Q9SJZ3 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial2.9e-0546.51Show/hide
Query:  GVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        G+ PDE TFIGLL  C HG  +   R YF  +K  F+  P L+
Subjt:  GVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

Q9SR82 Putative pentatricopeptide repeat-containing protein At3g088201.1e-0440.54Show/hide
Query:  GVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFS
        G+ PD +TF+GLLCGC H   + +  R+F+ +  V++
Subjt:  GVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFS

Arabidopsis top hitse value%identityAlignment
AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.0e-0641.86Show/hide
Query:  GVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        G+QPD+ TF+GLL  C+H   +D  R  F T+ + +  TP L+
Subjt:  GVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

AT2G02980.1 Pentatricopeptide repeat (PPR) superfamily protein6.0e-0647.62Show/hide
Query:  VQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        VQPDE TF+GLL  C+H   V+E R+YF  +   F   PS++
Subjt:  VQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

AT2G04860.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.7e-0646.51Show/hide
Query:  GVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        G++PDE TF+G+L  C HG FVDE +  F  + + F  +P+LQ
Subjt:  GVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

AT2G22410.1 SLOW GROWTH 12.1e-0646.51Show/hide
Query:  GVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ
        G+ PDE TFIGLL  C HG  +   R YF  +K  F+  P L+
Subjt:  GVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ

AT3G08820.1 Pentatricopeptide repeat (PPR) superfamily protein7.8e-0640.54Show/hide
Query:  GVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFS
        G+ PD +TF+GLLCGC H   + +  R+F+ +  V++
Subjt:  GVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATGGAGTTCAGCCTGATGAGAACACCTTCATTGGCCTGCTCTGTGGATGTGCTCATGGCACGTTTGTTGATGAGCGGCGTCGATATTTCGATACTGTGAAGCGGGTATT
CTCATCGACTCCTTCGCTTCAA
mRNA sequenceShow/hide mRNA sequence
AATGGAGTTCAGCCTGATGAGAACACCTTCATTGGCCTGCTCTGTGGATGTGCTCATGGCACGTTTGTTGATGAGCGGCGTCGATATTTCGATACTGTGAAGCGGGTATT
CTCATCGACTCCTTCGCTTCAA
Protein sequenceShow/hide protein sequence
NGVQPDENTFIGLLCGCAHGTFVDERRRYFDTVKRVFSSTPSLQ