CuGenDBv2

Gene ID	MS019503
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Genome location	scaffold729:49419..49640
RNA-Seq Expression	MS019503
Synteny	MS019503
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAF4396239.1 hypothetical protein F8388_019785 [Cannabis sativa]

1.9e-22

83.78

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Query:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        LPKQIFL LYINA  EK+F LLI+RQRWLRTNSSL NGFF SNT SESYQYLS LFLSNG LLD+MTKTLLRKR
Subjt:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

YP_009127486.1 hypothetical chloroplast RF21 [Indigofera tinctoria]

1.5e-22

81.08

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Query:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        LP  I+   +IN  QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNG LLDQMTKTLLRKR
Subjt:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

YP_009669445.1 Ycf2 protein [Krameria bicolor]

1.1e-22

81.08

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Query:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        LP  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNGRLLDQMTKTLLRKR
Subjt:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

YP_009669529.1 Ycf2 protein [Krameria lanceolata]

1.1e-22

81.08

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Query:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        LP  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNGRLLDQMTKTLLRKR
Subjt:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

YP_009766718.1 Ycf2 [Petalostylis labicheoides]

1.5e-22

81.08

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Query:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        LP  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNGRLLDQMTKTLLRKR
Subjt:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

TrEMBL top hits

e value

%identity

Alignment

A0A158V0L0 Protein Ycf2

7.0e-23

81.08

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Query:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        LP  I+   +IN  QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNG LLDQMTKTLLRKR
Subjt:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

A0A4Y5PR25 Protein Ycf2

5.4e-23

81.08

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Query:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        LP  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNGRLLDQMTKTLLRKR
Subjt:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

A0A4Y5PR37 Protein Ycf2

5.4e-23

81.08

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Query:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        LP  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNGRLLDQMTKTLLRKR
Subjt:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

A0A6H0E618 Protein Ycf2

7.0e-23

81.08

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Query:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        LP  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNGRLLDQMTKTLLRKR
Subjt:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

A0A7J6HNF0 Uncharacterized protein

9.2e-23

83.78

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Query:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        LPKQIFL LYINA  EK+F LLI+RQRWLRTNSSL NGFF SNT SESYQYLS LFLSNG LLD+MTKTLLRKR
Subjt:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

SwissProt top hits

e value

%identity

Alignment

B1A978 Protein Ycf2

1.6e-24

79.45

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Query:  PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        P  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNG LLDQMTKTLLRKR
Subjt:  PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

Q09MB4 Protein Ycf2

1.6e-24

79.45

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Query:  PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        P  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNG LLDQMTKTLLRKR
Subjt:  PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

Q14F97 Protein Ycf2

8.0e-24

78.08

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Query:  PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        P  I+   +I   QEKHF LLIHRQRWLRT SSL NGFF SNT SESYQYLSNLFLSNGRLLDQMTK LLRKR
Subjt:  PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

Q49KT6 Protein Ycf2

3.2e-25

80.82

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Query:  PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        P  I+   +I   QEKHF LLIHRQRWLRTNSSL NGFF SNT SESYQYLSNLFLSNGRLLDQMTKTLLRKR
Subjt:  PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

Q9B1K6 Protein Ycf2

3.6e-24

77.03

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Query:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        LP  I+   +I   QEKHF LLIHRQRWLRTN+SL NGFF SNT SESYQYLSN+FLSNG LLDQMTKTLLRKR
Subjt:  LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

1.1e-23

73.97

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Query:  PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        P  I+   +I   QEKHF LLI RQRWLRTNSSL NGFF SNT SESYQYLSNLF+SNG LLD+MTKTLL+KR
Subjt:  PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

1.1e-23

73.97

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Query:  PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR
        P  I+   +I   QEKHF LLI RQRWLRTNSSL NGFF SNT SESYQYLSNLF+SNG LLD+MTKTLL+KR
Subjt:  PKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

Sequences

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CDS sequence

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CTTCCCAAACAGATCTTCCTACCTCTATATATAAACGCTGCACAAGAAAAACACTTCAGATTGTTGATTCATCGCCAGAGATGGCTTAGAACTAATAGTTCATTATTTAA
TGGATTTTTCGATTCTAATACTTCATCCGAGAGTTATCAGTATTTATCAAATCTGTTTCTATCTAACGGAAGGCTATTGGATCAAATGACAAAGACATTGTTGAGAAAAA
GA

mRNA sequence

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Protein sequence

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LPKQIFLPLYINAAQEKHFRLLIHRQRWLRTNSSLFNGFFDSNTSSESYQYLSNLFLSNGRLLDQMTKTLLRKR

MS019503 (gene) of Bitter gourd (TR) v1 genome