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MS019522 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019522
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReplication protein A 14 kDa subunit B
Genome locationscaffold729:167387..167704
RNA-Seq ExpressionMS019522
SyntenyMS019522
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043875.1 replication protein A 14 kDa subunit B [Cucumis melo var. makuwa]1.4e-3989.69Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFGMLSSSPIVILE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI GKSTDDNQI VKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFGMLSSS ++ L+
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFGMLSSSPIVILE

TYK25262.1 replication protein A 14 kDa subunit B [Cucumis melo var. makuwa]4.9e-4089.69Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFGMLSSSPIVILE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI+GKSTDDNQI VKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFGMLSSS ++ L+
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFGMLSSSPIVILE

XP_022144611.1 replication protein A 14 kDa subunit B [Momordica charantia]8.4e-40100Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF

XP_022983164.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]4.6e-3896.47Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF
        MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGVIYGKSTDDNQI VKGSPPFSLSKFVEVIGIADTDKSIR DVWTNFGDSF
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF

XP_023528146.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]6.0e-3896.47Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQI VKGSPPF+LSKFVEVIGIADTDKSIR DVWTNFGDSF
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF

TrEMBL top hitse value%identityAlignment
A0A5A7TR56 Replication protein A 14 kDa subunit B6.9e-4089.69Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFGMLSSSPIVILE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI GKSTDDNQI VKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFGMLSSS ++ L+
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFGMLSSSPIVILE

A0A5D3DP16 Replication protein A 14 kDa subunit B2.4e-4089.69Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFGMLSSSPIVILE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI+GKSTDDNQI VKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFGMLSSS ++ L+
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFGMLSSSPIVILE

A0A6J1CTX6 replication protein A 14 kDa subunit B4.1e-40100Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF

A0A6J1F9M2 replication protein A 14 kDa subunit B-like5.0e-3896.47Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDD+QI VKGSPPFSLSKFVEVIGIADTDKSIR DVWTNFGDSF
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF

A0A6J1J6J3 replication protein A 14 kDa subunit B-like2.2e-3896.47Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF
        MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGVIYGKSTDDNQI VKGSPPFSLSKFVEVIGIADTDKSIR DVWTNFGDSF
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B7.9e-2563.53Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF
        MDTS+P+ FVN  LLR Y+G++VRAVIQV     G + GKSTDD QI+VKGSP   L+ ++EVIGIA+TD +IR +VWTNFGDSF
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF

Q9LXK1 Replication protein A 14 kDa subunit A1.1e-2156.98Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI+V+G SPP  L+ ++EVIGIA++D +IR + WTNFG++F
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF

Q9SDK9 Replication protein A 14 kDa subunit7.7e-2049.41Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF
        MDTS P+ FVN E+L+++VGRRVR V+Q Q E  G++ G+STD +Q+ +KG+    +S +VE+IGIA+ +++IR +V T+FG++F
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein7.6e-2356.98Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI+V+G SPP  L+ ++EVIGIA++D +IR + WTNFG++F
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein7.6e-2356.98Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTDD QI+V+G SPP  L+ ++EVIGIA++D +IR + WTNFG++F
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKG-SPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein5.6e-2663.53Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF
        MDTS+P+ FVN  LLR Y+G++VRAVIQV     G + GKSTDD QI+VKGSP   L+ ++EVIGIA+TD +IR +VWTNFGDSF
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACATCAAACCCTTCAGTTTTTGTGAATGCTGAGCTTTTACGCCTGTATGTTGGGAGAAGAGTCCGGGCAGTGATTCAGGTTCAGTCTGAAGGCAATGGAGTCAT
ATATGGTAAATCGACTGACGACAACCAGATTATTGTGAAAGGCTCTCCACCATTTTCTCTTTCGAAGTTTGTTGAGGTCATTGGAATTGCTGATACTGACAAATCGATTC
GACCTGATGTATGGACCAATTTTGGCGACTCATTTGGTATGCTCTCTTCTTCGCCCATTGTTATTCTCGAAGGACATTTGAAGCTGTATAGCACTAGT
mRNA sequenceShow/hide mRNA sequence
ATGGATACATCAAACCCTTCAGTTTTTGTGAATGCTGAGCTTTTACGCCTGTATGTTGGGAGAAGAGTCCGGGCAGTGATTCAGGTTCAGTCTGAAGGCAATGGAGTCAT
ATATGGTAAATCGACTGACGACAACCAGATTATTGTGAAAGGCTCTCCACCATTTTCTCTTTCGAAGTTTGTTGAGGTCATTGGAATTGCTGATACTGACAAATCGATTC
GACCTGATGTATGGACCAATTTTGGCGACTCATTTGGTATGCTCTCTTCTTCGCCCATTGTTATTCTCGAAGGACATTTGAAGCTGTATAGCACTAGT
Protein sequenceShow/hide protein sequence
MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIVKGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFGMLSSSPIVILEGHLKLYSTS