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MS019580 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019580
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein S24
Genome locationscaffold729:752622..752878
RNA-Seq ExpressionMS019580
SyntenyMS019580
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001976 - Ribosomal protein S24e


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EPS57470.1 hypothetical protein M569_17346 [Genlisea aurea]1.1e-1360Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKKR
        PNAIFVFK RTHF GGK +G  +  D +ENA KY   Y L IRN LATKVEK R+QLKERKNRA KI GV++ +     K  KK+
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKKR

RXH82404.1 hypothetical protein DVH24_036745 [Malus domestica]8.2e-1460.71Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK
        PN IFVFK RTHF GGK +G  +  D +ENA KY   Y L IRN L TKVEK R+QLKERKNRA KI GV++ +     KTKKK
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK

TQD73606.1 hypothetical protein C1H46_040859 [Malus baccata]8.2e-1460.71Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK
        PNAIFVFK RTHF GGK +G  +  D +ENA KY   Y L IRN L TKVEK R+QLKERKNRA KI GV++ +     K+KKK
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK

XP_008370671.1 40S ribosomal protein S24-1 [Malus domestica]8.2e-1460.71Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK
        PNAIFVFK RTHF GGK +G  +  D +ENA KY   Y L IRN L TKVEK R+QLKERKNRA KI GV++ +     K+KKK
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK

XP_008388650.1 40S ribosomal protein S24-1 [Malus domestica]2.8e-1461.9Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK
        PNAIFVFK RTHF GGK +G  +  D +ENA KY   Y L IRN L TKVEK R+QLKERKNRA KI GV++ +     KTKKK
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK

TrEMBL top hitse value%identityAlignment
A0A498IJV4 40S ribosomal protein S244.0e-1460.71Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK
        PN IFVFK RTHF GGK +G  +  D +ENA KY   Y L IRN L TKVEK R+QLKERKNRA KI GV++ +     KTKKK
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK

A0A498K1B6 40S ribosomal protein S244.0e-1460.71Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK
        PNAIFVFK RTHF GGK +G  +  D +ENA KY   Y L IRN L TKVEK R+QLKERKNRA KI GV++ +     K+KKK
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK

A0A540KHA3 40S ribosomal protein S244.0e-1460.71Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK
        PNAIFVFK RTHF GGK +G  +  D +ENA KY   Y L IRN L TKVEK R+QLKERKNRA KI GV++ +     K+KKK
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK

A0A540M377 40S ribosomal protein S241.4e-1461.9Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK
        PNAIFVFK RTHF GGK +G  +  D +ENA KY   Y L IRN L TKVEK R+QLKERKNRA KI GV++ +     KTKKK
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK

A0A5N5HV68 40S ribosomal protein S241.4e-1461.9Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK
        PNAIFVFK RTHF GGK +G  +  D +ENA KY   Y L IRN L TKVEK R+QLKERKNRA KI GV++ +     KTKKK
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK

SwissProt top hitse value%identityAlignment
P62847 40S ribosomal protein S241.6e-0441.67Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVER
        P+ IFVF  RTHF GGK +G  +  D ++ A K    + L  R+ L  K +  R+Q KERKNR  K+ G  +
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVER

Q4R5H5 40S ribosomal protein S241.6e-0441.67Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVER
        P+ IFVF  RTHF GGK +G  +  D ++ A K    + L  R+ L  K +  R+Q KERKNR  K+ G  +
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVER

Q56JU9 40S ribosomal protein S241.6e-0441.67Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVER
        P+ IFVF  RTHF GGK +G  +  D ++ A K    + L  R+ L  K +  R+Q KERKNR  K+ G  +
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVER

Q8LC83 40S ribosomal protein S24-25.0e-1457.14Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK
        PNAIF FK RTHF GGK SG  +  D +ENA K+   Y L IRN L TK+EK R+Q+KERKNRA KI GV++ +      TKKK
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK

Q9SS17 40S ribosomal protein S24-12.9e-1459.46Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPR
        PNAIFVFK RTHF GGK SG  +  D +E+A K+   Y L IRN L TK+EK R+Q+KERKNRA KI GV++ +
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPR

Arabidopsis top hitse value%identityAlignment
AT3G04920.1 Ribosomal protein S24e family protein2.1e-1559.46Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPR
        PNAIFVFK RTHF GGK SG  +  D +E+A K+   Y L IRN L TK+EK R+Q+KERKNRA KI GV++ +
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPR

AT5G28060.1 Ribosomal protein S24e family protein3.5e-1557.14Show/hide
Query:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK
        PNAIF FK RTHF GGK SG  +  D +ENA K+   Y L IRN L TK+EK R+Q+KERKNRA KI GV++ +      TKKK
Subjt:  PNAIFVFKIRTHFSGGKCSGL-IDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCAAATGCAATCTTTGTTTTCAAGATTCGGACTCACTTCAGTGGGGGAAAATGTAGTGGTTTGATAGATGATGATTACATTGAGAATGCAATGAAGTACGGACTCAACTA
CATGCTAATAATAAGGAATGAACTTGCCACCAAGGTAGAAAAATTAAGACAGCAGTTGAAGGAAAGAAAGAACAGGGCCAACAAAATATGTGGAGTTGAAAGACCAAGGC
ATCAGATTCTTACCAAGACAAAAAAAAAAAGA
mRNA sequenceShow/hide mRNA sequence
CCAAATGCAATCTTTGTTTTCAAGATTCGGACTCACTTCAGTGGGGGAAAATGTAGTGGTTTGATAGATGATGATTACATTGAGAATGCAATGAAGTACGGACTCAACTA
CATGCTAATAATAAGGAATGAACTTGCCACCAAGGTAGAAAAATTAAGACAGCAGTTGAAGGAAAGAAAGAACAGGGCCAACAAAATATGTGGAGTTGAAAGACCAAGGC
ATCAGATTCTTACCAAGACAAAAAAAAAAAGA
Protein sequenceShow/hide protein sequence
PNAIFVFKIRTHFSGGKCSGLIDDDYIENAMKYGLNYMLIIRNELATKVEKLRQQLKERKNRANKICGVERPRHQILTKTKKKR