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MS019584 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019584
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase subunit beta''
Genome locationscaffold729:777514..777704
RNA-Seq ExpressionMS019584
SyntenyMS019584
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFU94784.1 RpoC2, partial [Ctenolophon englerianus]8.9e-2178.69Show/hide
Query:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYRFV
        SIGEPG QL LRTFH GG+FT GT EH+RAPSNGKIKFNEDLVHPTRTCHGHP F+ Y ++
Subjt:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYRFV

QJU02459.1 RNA polymerase beta'' subunit [Magnolia amoena]5.7e-2081.36Show/hide
Query:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYR
        SIGEPG QL LRTFH GG+FT GT EH+RAPSNGKIKFNEDLVHPTRT HGHP F+ YR
Subjt:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYR

YP_008993424.1 RNA polymerase beta' subunit [Magnolia kobus]5.7e-2081.36Show/hide
Query:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYR
        SIGEPG QL LRTFH GG+FT GT EH+RAPSNGKIKFNEDLVHPTRT HGHP F+ YR
Subjt:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYR

YP_009434669.1 DNA-directed RNA polymerase beta'' subunit [Sinowilsonia henryi]5.7e-2081.36Show/hide
Query:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYR
        SIGEPG QL LRTFH GG+FT GT EH+RAPSNGKIKFNEDLVHPTRT HGHP F+ YR
Subjt:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYR

YP_009872687.1 RNA polymerase beta subunit [Ctenolophon englerianus]8.9e-2178.69Show/hide
Query:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYRFV
        SIGEPG QL LRTFH GG+FT GT EH+RAPSNGKIKFNEDLVHPTRTCHGHP F+ Y ++
Subjt:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYRFV

TrEMBL top hitse value%identityAlignment
A0A0U1UBW6 DNA-directed RNA polymerase subunit beta''2.8e-2081.36Show/hide
Query:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYR
        SIGEPG QL LRTFH GG+FT GT EH+RAPSNGKIKFNEDLVHPTRT HGHP F+ YR
Subjt:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYR

A0A291EX85 DNA-directed RNA polymerase subunit beta''2.8e-2081.36Show/hide
Query:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYR
        SIGEPG QL LRTFH GG+FT GT EH+RAPSNGKIKFNEDLVHPTRT HGHP F+ YR
Subjt:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYR

A0A6M8PNE4 DNA-directed RNA polymerase subunit beta''2.8e-2081.36Show/hide
Query:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYR
        SIGEPG QL LRTFH GG+FT GT EH+RAPSNGKIKFNEDLVHPTRT HGHP F+ YR
Subjt:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYR

A0A7D4WAZ1 DNA-directed RNA polymerase subunit beta''4.3e-2178.69Show/hide
Query:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYRFV
        SIGEPG QL LRTFH GG+FT GT EH+RAPSNGKIKFNEDLVHPTRTCHGHP F+ Y ++
Subjt:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYRFV

K4K6N6 DNA-directed RNA polymerase (Fragment)4.3e-2178.69Show/hide
Query:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYRFV
        SIGEPG QL LRTFH GG+FT GT EH+RAPSNGKIKFNEDLVHPTRTCHGHP F+ Y ++
Subjt:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYRFV

SwissProt top hitse value%identityAlignment
A0ZZ25 DNA-directed RNA polymerase subunit beta''3.7e-2279.66Show/hide
Query:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYR
        SIGEPG QL LRTFH GG+FT GT EH+RAP NGKIKFNEDLVHPTRT HGHP F+ YR
Subjt:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYR

A4QK08 DNA-directed RNA polymerase subunit beta''3.7e-2279.66Show/hide
Query:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYR
        SIGEPG QL LRTFH GG+FT GT EH+RAP NGKIKFNEDLVHPTRT HGHP F+ YR
Subjt:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYR

A6MMB2 DNA-directed RNA polymerase subunit beta''3.7e-2281.03Show/hide
Query:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLY
        SIGEPG QL LRTFH GG+FT GT EH+RAPSNGKIKFNEDLVHPTRT HGHP F+ Y
Subjt:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLY

A8SE78 DNA-directed RNA polymerase subunit beta''3.7e-2281.03Show/hide
Query:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLY
        SIGEPG QL LRTFH GG+FT GT EH+RAPSNGKIKFNEDLVHPTRT HGHP F+ Y
Subjt:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLY

Q4VZP3 DNA-directed RNA polymerase subunit beta''2.9e-2282.76Show/hide
Query:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLY
        SIGEPG QL LRTFH GG+FT GT EHIRAPSNGKIKFNEDLVHPTRT HGHP F+ Y
Subjt:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLY

Arabidopsis top hitse value%identityAlignment
ATCG00170.1 DNA-directed RNA polymerase family protein1.3e-2279.31Show/hide
Query:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLY
        SIGEPG QL LRTFH GG+FT GT EH+RAP NGKIKFNEDLVHPTRT HGHP F+ Y
Subjt:  SIGEPGIQLILRTFHIGGIFT-GTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTATTGGAGAACCGGGCATTCAACTAATATTAAGAACTTTTCATATCGGCGGAATATTCACTGGGACTAGAGAACATATACGAGCTCCTTCTAATGGAAAAATAAAATT
CAATGAGGATTTGGTTCATCCCACACGTACATGTCATGGGCATCCTACTTTTATGTTATATAGATTTGTATGTAACTAT
mRNA sequenceShow/hide mRNA sequence
TCTATTGGAGAACCGGGCATTCAACTAATATTAAGAACTTTTCATATCGGCGGAATATTCACTGGGACTAGAGAACATATACGAGCTCCTTCTAATGGAAAAATAAAATT
CAATGAGGATTTGGTTCATCCCACACGTACATGTCATGGGCATCCTACTTTTATGTTATATAGATTTGTATGTAACTAT
Protein sequenceShow/hide protein sequence
SIGEPGIQLILRTFHIGGIFTGTREHIRAPSNGKIKFNEDLVHPTRTCHGHPTFMLYRFVCNY