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MS019603 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019603
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPectinesterase
Genome locationscaffold729:911694..912398
RNA-Seq ExpressionMS019603
SyntenyMS019603
Gene Ontology termsGO:0042545 - cell wall modification (biological process)
GO:0045490 - pectin catabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0030599 - pectinesterase activity (molecular function)
GO:0045330 - aspartyl esterase activity (molecular function)
InterPro domainsIPR000070 - Pectinesterase, catalytic
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043958.1 putative pectinesterase 14 isoform X1 [Cucumis melo var. makuwa]1.2e-4066.42Show/hide
Query:  GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN
        GC+IKSIAKE+ GG VSGAITA  RQ+ S++TGFAF+NCTI+  G           ATV FS TYM+ VV  DGWNDWRD SRDQSVLFGEYECFGDGAN
Subjt:  GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN

Query:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQTT
        Y LRV Y+KQLNQ EA+PY+DVS +DG++WL   Q T
Subjt:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQTT

XP_004137990.1 putative pectinesterase 14 [Cucumis sativus]4.2e-4167.13Show/hide
Query:  GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN
        GC+IKSIAKE+ GG VSGAITA  RQ+ S++TGFAF+NCTI+  G           ATV FS TYM+ VVA DGWNDWRD SRDQSVLFGEYECFGDGAN
Subjt:  GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN

Query:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQ--TTFSAI
        YRLRV Y+KQLNQ EA+ Y+DVS VDG++WLI  Q  +T S I
Subjt:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQ--TTFSAI

XP_008442748.1 PREDICTED: putative pectinesterase 14 isoform X1 [Cucumis melo]1.2e-4066.42Show/hide
Query:  GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN
        GC+IKSIAKE+ GG VSGAITA  RQ+ S++TGFAF+NCTI+  G           ATV FS TYM+ VV  DGWNDWRD SRDQSVLFGEYECFGDGAN
Subjt:  GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN

Query:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQTT
        Y LRV Y+KQLNQ EA+PY+DVS +DG++WL   Q T
Subjt:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQTT

XP_022144633.1 LOW QUALITY PROTEIN: probable pectinesterase 15 [Momordica charantia]4.6e-5685Show/hide
Query:  GCQIKSIAKELWGGRVSGAIT--ARQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN
        GC+IKSIAKELWGG VSGAIT  ARQSSSDQTGFAFVNCTIT  G          SATV FSTTYMSGVVAPDGWNDWRD SRDQSVLFGEYECFGDGAN
Subjt:  GCQIKSIAKELWGGRVSGAIT--ARQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN

Query:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQTTFSA
        YRLRV YAKQLNQ EAEPYMDVS VDGSEWLIYHQTTFSA
Subjt:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQTTFSA

XP_038905816.1 putative pectinesterase 14 [Benincasa hispida]6.1e-4065.49Show/hide
Query:  GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN
        GC+IKSIAKE+  G VSGAITA  RQ+ +++TGFAF+NCTI   G           ATV FS TYM+ +VA DGWNDWRD SRDQSVLFGEYECFGDGAN
Subjt:  GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN

Query:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQ-TTFSAI
        Y  RV Y+KQLNQ EA+PY+DVS VDG++WLI  Q TT S I
Subjt:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQ-TTFSAI

TrEMBL top hitse value%identityAlignment
A0A0A0LDS9 Pectinesterase2.0e-4167.13Show/hide
Query:  GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN
        GC+IKSIAKE+ GG VSGAITA  RQ+ S++TGFAF+NCTI+  G           ATV FS TYM+ VVA DGWNDWRD SRDQSVLFGEYECFGDGAN
Subjt:  GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN

Query:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQ--TTFSAI
        YRLRV Y+KQLNQ EA+ Y+DVS VDG++WLI  Q  +T S I
Subjt:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQ--TTFSAI

A0A1S3B6F5 Pectinesterase5.9e-4166.42Show/hide
Query:  GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN
        GC+IKSIAKE+ GG VSGAITA  RQ+ S++TGFAF+NCTI+  G           ATV FS TYM+ VV  DGWNDWRD SRDQSVLFGEYECFGDGAN
Subjt:  GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN

Query:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQTT
        Y LRV Y+KQLNQ EA+PY+DVS +DG++WL   Q T
Subjt:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQTT

A0A5A7TM68 Pectinesterase5.9e-4166.42Show/hide
Query:  GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN
        GC+IKSIAKE+ GG VSGAITA  RQ+ S++TGFAF+NCTI+  G           ATV FS TYM+ VV  DGWNDWRD SRDQSVLFGEYECFGDGAN
Subjt:  GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN

Query:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQTT
        Y LRV Y+KQLNQ EA+PY+DVS +DG++WL   Q T
Subjt:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQTT

A0A5D3DNS7 Pectinesterase5.9e-4166.42Show/hide
Query:  GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN
        GC+IKSIAKE+ GG VSGAITA  RQ+ S++TGFAF+NCTI+  G           ATV FS TYM+ VV  DGWNDWRD SRDQSVLFGEYECFGDGAN
Subjt:  GCQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN

Query:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQTT
        Y LRV Y+KQLNQ EA+PY+DVS +DG++WL   Q T
Subjt:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQTT

A0A6J1CTT3 Pectinesterase2.2e-5685Show/hide
Query:  GCQIKSIAKELWGGRVSGAIT--ARQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN
        GC+IKSIAKELWGG VSGAIT  ARQSSSDQTGFAFVNCTIT  G          SATV FSTTYMSGVVAPDGWNDWRD SRDQSVLFGEYECFGDGAN
Subjt:  GCQIKSIAKELWGGRVSGAIT--ARQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGAN

Query:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQTTFSA
        YRLRV YAKQLNQ EAEPYMDVS VDGSEWLIYHQTTFSA
Subjt:  YRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWLIYHQTTFSA

SwissProt top hitse value%identityAlignment
O23038 Probable pectinesterase 81.8e-1841.35Show/hide
Query:  CQIKSIAKELWGG--RVSGAITA--RQSSSDQTGFAFVNCTITMQG--------SPTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDG
        C+I S+A +L  G   V+GA+TA  R S  + +GF+FVNCTI   G         P S  V  STT M+ V+AP+GWN++ D SRD ++ +GEY C G G
Subjt:  CQIKSIAKELWGG--RVSGAITA--RQSSSDQTGFAFVNCTITMQG--------SPTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDG

Query:  ANYRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWL
        A+   R  Y ++LN+ +    ++ S +DG +WL
Subjt:  ANYRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWL

Q8VYZ3 Probable pectinesterase 538.6e-2140.91Show/hide
Query:  GCQIKSIAKELWGGRVSGAITARQSSS--DQTGFAFVNCTITMQG--------SPTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGA
        GC + +IA +L      GA+TA+  SS  + TGF+FV C +T  G         P S  V F+ TYM  ++ P GW +W D SR+ +V +G+Y+C G GA
Subjt:  GCQIKSIAKELWGGRVSGAITARQSSS--DQTGFAFVNCTITMQG--------SPTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGA

Query:  NYRLRVTYAKQL-NQEAEPYMDVSNVDGSEWL
        NY  RV +A++L ++EA+P++ ++ +DGSEW+
Subjt:  NYRLRVTYAKQL-NQEAEPYMDVSNVDGSEWL

Q9SIJ9 Putative pectinesterase 115.8e-1738.26Show/hide
Query:  SGAITA--RQSSSDQTGFAFVNCTITMQGSP-------TSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQL-NQEA
        +G+ITA  R S+++++GF F+ C +T  GS          + V F+ ++ S VVAP GWN W DS+++ +V +GEY+C+G GA+   RV ++KQL ++EA
Subjt:  SGAITA--RQSSSDQTGFAFVNCTITMQGSP-------TSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQL-NQEA

Query:  EPYMDVSNVDGSEWL
          ++    + G +WL
Subjt:  EPYMDVSNVDGSEWL

Q9ZQA3 Probable pectinesterase 159.5e-2850Show/hide
Query:  CQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANY
        C I SIAK    G V+G+ITA  RQS  +Q+GF+FVNC I   G           ATV FS TYMSG++ P+GWN+W DS+++++V FGE++C+G GA+Y
Subjt:  CQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANY

Query:  RLRVTYAKQL-NQEAEPYMDVSNVDGSEWL
        + RV + KQL + EA  ++DVS +DG EWL
Subjt:  RLRVTYAKQL-NQEAEPYMDVSNVDGSEWL

Q9ZQA4 Putative pectinesterase 143.0e-2146.15Show/hide
Query:  CQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANY
        C + SIAKE       G ITA  + +  D+TGF FVNC IT              A V FS TYMS VV+ DGWND  D    ++V +GE+ C+G GAN+
Subjt:  CQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANY

Query:  RLRVTYAKQLNQ-EAEPYMDVSNVDGSEWL
          RVTYAK L+  EA P+ ++S +DG EWL
Subjt:  RLRVTYAKQLNQ-EAEPYMDVSNVDGSEWL

Arabidopsis top hitse value%identityAlignment
AT1G05310.1 Pectin lyase-like superfamily protein1.3e-1941.35Show/hide
Query:  CQIKSIAKELWGG--RVSGAITA--RQSSSDQTGFAFVNCTITMQG--------SPTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDG
        C+I S+A +L  G   V+GA+TA  R S  + +GF+FVNCTI   G         P S  V  STT M+ V+AP+GWN++ D SRD ++ +GEY C G G
Subjt:  CQIKSIAKELWGG--RVSGAITA--RQSSSDQTGFAFVNCTITMQG--------SPTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDG

Query:  ANYRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWL
        A+   R  Y ++LN+ +    ++ S +DG +WL
Subjt:  ANYRLRVTYAKQLNQ-EAEPYMDVSNVDGSEWL

AT2G21610.1 pectinesterase 114.1e-1838.26Show/hide
Query:  SGAITA--RQSSSDQTGFAFVNCTITMQGSP-------TSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQL-NQEA
        +G+ITA  R S+++++GF F+ C +T  GS          + V F+ ++ S VVAP GWN W DS+++ +V +GEY+C+G GA+   RV ++KQL ++EA
Subjt:  SGAITA--RQSSSDQTGFAFVNCTITMQGSP-------TSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQL-NQEA

Query:  EPYMDVSNVDGSEWL
          ++    + G +WL
Subjt:  EPYMDVSNVDGSEWL

AT2G36700.1 Pectin lyase-like superfamily protein2.1e-2246.15Show/hide
Query:  CQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANY
        C + SIAKE       G ITA  + +  D+TGF FVNC IT              A V FS TYMS VV+ DGWND  D    ++V +GE+ C+G GAN+
Subjt:  CQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANY

Query:  RLRVTYAKQLNQ-EAEPYMDVSNVDGSEWL
          RVTYAK L+  EA P+ ++S +DG EWL
Subjt:  RLRVTYAKQLNQ-EAEPYMDVSNVDGSEWL

AT2G36710.1 Pectin lyase-like superfamily protein6.7e-2950Show/hide
Query:  CQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANY
        C I SIAK    G V+G+ITA  RQS  +Q+GF+FVNC I   G           ATV FS TYMSG++ P+GWN+W DS+++++V FGE++C+G GA+Y
Subjt:  CQIKSIAKELWGGRVSGAITA--RQSSSDQTGFAFVNCTITMQGS-------PTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANY

Query:  RLRVTYAKQL-NQEAEPYMDVSNVDGSEWL
        + RV + KQL + EA  ++DVS +DG EWL
Subjt:  RLRVTYAKQL-NQEAEPYMDVSNVDGSEWL

AT5G19730.1 Pectin lyase-like superfamily protein6.1e-2240.91Show/hide
Query:  GCQIKSIAKELWGGRVSGAITARQSSS--DQTGFAFVNCTITMQG--------SPTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGA
        GC + +IA +L      GA+TA+  SS  + TGF+FV C +T  G         P S  V F+ TYM  ++ P GW +W D SR+ +V +G+Y+C G GA
Subjt:  GCQIKSIAKELWGGRVSGAITARQSSS--DQTGFAFVNCTITMQG--------SPTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGA

Query:  NYRLRVTYAKQL-NQEAEPYMDVSNVDGSEWL
        NY  RV +A++L ++EA+P++ ++ +DGSEW+
Subjt:  NYRLRVTYAKQL-NQEAEPYMDVSNVDGSEWL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTTGCCAAATAAAGTCAATTGCAAAGGAATTGTGGGGTGGTCGGGTAAGTGGAGCCATCACAGCAAGGCAGTCCAGCAGCGACCAAACTGGGTTTGCTTTTGTCAACTG
CACCATCACAATGCAAGGCAGTCCTACCTCTGCCACCGTCGCCTTCTCCACCACGTACATGAGCGGAGTTGTCGCCCCCGATGGATGGAATGATTGGAGAGATTCTTCCC
GAGACCAGAGTGTGTTGTTTGGGGAATATGAATGCTTTGGAGATGGAGCAAATTACAGGTTGAGAGTTACATATGCAAAGCAGCTGAATCAAGAAGCTGAACCTTATATG
GATGTTTCCAATGTTGATGGAAGTGAATGGCTCATCTATCACCAAACCACTTTCTCTGCCATT
mRNA sequenceShow/hide mRNA sequence
GGTTGCCAAATAAAGTCAATTGCAAAGGAATTGTGGGGTGGTCGGGTAAGTGGAGCCATCACAGCAAGGCAGTCCAGCAGCGACCAAACTGGGTTTGCTTTTGTCAACTG
CACCATCACAATGCAAGGCAGTCCTACCTCTGCCACCGTCGCCTTCTCCACCACGTACATGAGCGGAGTTGTCGCCCCCGATGGATGGAATGATTGGAGAGATTCTTCCC
GAGACCAGAGTGTGTTGTTTGGGGAATATGAATGCTTTGGAGATGGAGCAAATTACAGGTTGAGAGTTACATATGCAAAGCAGCTGAATCAAGAAGCTGAACCTTATATG
GATGTTTCCAATGTTGATGGAAGTGAATGGCTCATCTATCACCAAACCACTTTCTCTGCCATT
Protein sequenceShow/hide protein sequence
GCQIKSIAKELWGGRVSGAITARQSSSDQTGFAFVNCTITMQGSPTSATVAFSTTYMSGVVAPDGWNDWRDSSRDQSVLFGEYECFGDGANYRLRVTYAKQLNQEAEPYM
DVSNVDGSEWLIYHQTTFSAI