CuGenDBv2

Gene ID	MS019612
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	splicing factor 3A subunit 2
Genome location	scaffold729:1005398..1008013
RNA-Seq Expression	MS019612
Synteny	MS019612
Gene Ontology terms	GO:0000245 - spliceosomal complex assembly (biological process) GO:0005686 - U2 snRNP (cellular component) GO:0071004 - U2-type prespliceosome (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000690 - Matrin/U1-C, C2H2-type zinc finger IPR003604 - Matrin/U1-C-like, C2H2-type zinc finger IPR031781 - SF3A2 domain IPR036236 - Zinc finger C2H2 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0043971.1 splicing factor 3A subunit 2 [Cucumis melo var. makuwa]

6.1e-169

92.88

Show/hide

Query:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
        MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
Subjt:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR

Query:  KVSV------------LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTP
        KVSV             KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTP
Subjt:  KVSV------------LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTP

Query:  KFFSHWDPDSKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGT
        KFFSHWDPDSKMFTLQLYFKSKPQEANKP  VPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVM+NGPPRPM PPGG 
Subjt:  KFFSHWDPDSKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGT

Query:  PSIPPPPPVGNNTMANF---TQMNRPPMPPPPQGFQGQGARQPPPPPPNMG
        P IPPPPPVGNNTMANF   TQMNRPPMPPPPQ F GQG RQPPPPPPNMG
Subjt:  PSIPPPPPVGNNTMANF---TQMNRPPMPPPPQGFQGQGARQPPPPPPNMG

XP_004137848.1 splicing factor 3A subunit 2 [Cucumis sativus]

2.5e-170

95.03

Show/hide

Query:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
        MDREWGSKPGSGGAA+AQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
Subjt:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR

Query:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
        KVSV   +KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
Subjt:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD

Query:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV
        SKMFTLQLYFKSKPQEANKP  VPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVM+NGPPRPM PPGG P IPPPPP+
Subjt:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV

Query:  GNNTMANF---TQMNRPPMPPPPQGFQGQGARQPPPPPPNMG
        GNNTMANF   TQMNRPPMPPPPQGF GQG RQPPPPPPNMG
Subjt:  GNNTMANF---TQMNRPPMPPPPQGFQGQGARQPPPPPPNMG

XP_008442733.1 PREDICTED: splicing factor 3A subunit 2 [Cucumis melo]

4.2e-170

95.32

Show/hide

Query:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
        MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
Subjt:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR

Query:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
        KVSV   +KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
Subjt:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD

Query:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV
        SKMFTLQLYFKSKPQEANKP  VPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVM+NGPPRPM PPGG P IPPPPPV
Subjt:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV

Query:  GNNTMANF---TQMNRPPMPPPPQGFQGQGARQPPPPPPNMG
        GNNTMANF   TQMNRPPMPPPPQ F GQG RQPPPPPPNMG
Subjt:  GNNTMANF---TQMNRPPMPPPPQGFQGQGARQPPPPPPNMG

XP_022144784.1 splicing factor 3A subunit 2 [Momordica charantia]

1.2e-175

97.94

Show/hide

Query:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
        MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
Subjt:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR

Query:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
        KVSV   +KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
Subjt:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD

Query:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV
        SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQA PPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV
Subjt:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV

Query:  GNNTMANFTQMNRPPMPPPPQGFQGQGARQPPPPPPNMG
        GNNTM NFTQMNRPPMPPPPQGFQGQG RQPPPPPPNMG
Subjt:  GNNTMANFTQMNRPPMPPPPQGFQGQGARQPPPPPPNMG

XP_038905938.1 splicing factor 3A subunit 2 [Benincasa hispida]

4.7e-169

94.74

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Query:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
        MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
Subjt:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR

Query:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
        KVSV   +KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
Subjt:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD

Query:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV
        SKMFTLQLYFKSKPQEANKP  VPAANGTVPSGAPPRP+PPPPQAP PPPPPPQQG PPRVPPPPMPGSLPPPPSVM+NGPPRPM PPGG P IPPPPPV
Subjt:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV

Query:  GNNTMANF---TQMNRPPMPPPPQGFQGQGARQPPPPPPNMG
        GNNTMANF   TQMNRPPMPPPPQGF GQG RQPPPPPPNMG
Subjt:  GNNTMANF---TQMNRPPMPPPPQGFQGQGARQPPPPPPNMG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LEB1 Matrin-type domain-containing protein

1.2e-170

95.03

Show/hide

Query:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
        MDREWGSKPGSGGAA+AQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
Subjt:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR

Query:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
        KVSV   +KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
Subjt:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD

Query:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV
        SKMFTLQLYFKSKPQEANKP  VPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVM+NGPPRPM PPGG P IPPPPP+
Subjt:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV

Query:  GNNTMANF---TQMNRPPMPPPPQGFQGQGARQPPPPPPNMG
        GNNTMANF   TQMNRPPMPPPPQGF GQG RQPPPPPPNMG
Subjt:  GNNTMANF---TQMNRPPMPPPPQGFQGQGARQPPPPPPNMG

A0A1S3B729 splicing factor 3A subunit 2

2.0e-170

95.32

Show/hide

Query:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
        MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
Subjt:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR

Query:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
        KVSV   +KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
Subjt:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD

Query:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV
        SKMFTLQLYFKSKPQEANKP  VPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVM+NGPPRPM PPGG P IPPPPPV
Subjt:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV

Query:  GNNTMANF---TQMNRPPMPPPPQGFQGQGARQPPPPPPNMG
        GNNTMANF   TQMNRPPMPPPPQ F GQG RQPPPPPPNMG
Subjt:  GNNTMANF---TQMNRPPMPPPPQGFQGQGARQPPPPPPNMG

A0A5A7TQW8 Splicing factor 3A subunit 2

3.0e-169

92.88

Show/hide

Query:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
        MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
Subjt:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR

Query:  KVSV------------LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTP
        KVSV             KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTP
Subjt:  KVSV------------LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTP

Query:  KFFSHWDPDSKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGT
        KFFSHWDPDSKMFTLQLYFKSKPQEANKP  VPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVM+NGPPRPM PPGG 
Subjt:  KFFSHWDPDSKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGT

Query:  PSIPPPPPVGNNTMANF---TQMNRPPMPPPPQGFQGQGARQPPPPPPNMG
        P IPPPPPVGNNTMANF   TQMNRPPMPPPPQ F GQG RQPPPPPPNMG
Subjt:  PSIPPPPPVGNNTMANF---TQMNRPPMPPPPQGFQGQGARQPPPPPPNMG

A0A5D3DPC7 Splicing factor 3A subunit 2

2.0e-170

95.32

Show/hide

Query:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
        MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
Subjt:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR

Query:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
        KVSV   +KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
Subjt:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD

Query:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV
        SKMFTLQLYFKSKPQEANKP  VPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVM+NGPPRPM PPGG P IPPPPPV
Subjt:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV

Query:  GNNTMANF---TQMNRPPMPPPPQGFQGQGARQPPPPPPNMG
        GNNTMANF   TQMNRPPMPPPPQ F GQG RQPPPPPPNMG
Subjt:  GNNTMANF---TQMNRPPMPPPPQGFQGQGARQPPPPPPNMG

A0A6J1CTB1 splicing factor 3A subunit 2

5.6e-176

97.94

Show/hide

Query:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
        MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
Subjt:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR

Query:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
        KVSV   +KIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
Subjt:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD

Query:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV
        SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQA PPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV
Subjt:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPV

Query:  GNNTMANFTQMNRPPMPPPPQGFQGQGARQPPPPPPNMG
        GNNTM NFTQMNRPPMPPPPQGFQGQG RQPPPPPPNMG
Subjt:  GNNTMANFTQMNRPPMPPPPQGFQGQGARQPPPPPPNMG

SwissProt top hits

e value

%identity

Alignment

A5PJN8 Splicing factor 3A subunit 2

7.0e-75

55.4

Show/hide

Query:  GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSV-
        G K GSGG AS+     DRRERLR+LALETID+ KDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQTNLA+RAA+EAKEAPAQP P K KV V 
Subjt:  GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSV-

Query:  --LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFT
          +KIGRPGY+VTKQ D+E  Q+SLLFQI+YPEI +   PRHRFMS+YEQR++P D+R+QYLL AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F 
Subjt:  --LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFT

Query:  LQLYFKSK--PQEANKPQTVPAANGTVP---SGAPPRP-----LPPPPQA----PPPPPPPPQQGAPPRVP--PPPMPGSLPPPPSVMSNGPPRPMPPPG
        LQ +FK +  P   + P   P      P   +G PPRP     LPPPP      PP PP  P    PP  P  PPP PG  PP P V         P PG
Subjt:  LQLYFKSK--PQEANKPQTVPAANGTVP---SGAPPRP-----LPPPPQA----PPPPPPPPQQGAPPRVP--PPPMPGSLPPPPSVMSNGPPRPMPPPG

Query:  GTPSIP---PPPPVGNNTMANFTQMNRPPMP---PPPQGFQ--GQGARQPPP---PPPNMG
          P  P   PP PV +   +       PP P   PP  G      G   P P   PPP+ G
Subjt:  GTPSIP---PPPPVGNNTMANFTQMNRPPMP---PPPQGFQ--GQGARQPPP---PPPNMG

Q15428 Splicing factor 3A subunit 2

2.0e-74

56.4

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Query:  GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSV-
        G K GSGG AS+     DRRERLR+LALETID+ KDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQTNLA+RAA+EAKEAPAQP P K KV V 
Subjt:  GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSV-

Query:  --LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFT
          +KIGRPGY+VTKQ DSE  Q+SLLFQI+YPEI +   PRHRFMS+YEQR++P D+R+QYLL AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F 
Subjt:  --LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFT

Query:  LQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLP----PPPSVMSNGPPRPMPPPGGTPSIPPPPPVG
        LQ +FK +          P A  ++P+G P    PPPP     PP PP    P  +PPPP PG LP    PP     +GPP P   P   P + PP PV 
Subjt:  LQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLP----PPPSVMSNGPPRPMPPPGGTPSIPPPPPVG

Query:  NNTMANFTQMNRPPMP---PPPQGFQGQGARQPPPP---PPNMG
        +   +       PP P   PP  G        PP P   PP  G
Subjt:  NNTMANFTQMNRPPMP---PPPQGFQGQGARQPPPP---PPNMG

Q54B65 Splicing factor 3A subunit 2

2.5e-64

59.91

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Query:  EWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQP------
        E+G K GSGG  S+Q + IDRRER ++L LE +D++KDPY + NH+GS+EC+LCLT+HNN GNYLAHTQGK+HQT+LA+RAA+E +E P+  +       
Subjt:  EWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQP------

Query:  ---HKRKVSVLKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKST---PKFF
           HK+    +KIGRPGY++ KQ DS+T Q SLLFQI+YPEIE   +PRHR MS++EQRV+  +K YQYLLFAAEPYE IAFK+P+ EID++T    KFF
Subjt:  ---HKRKVSVLKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKST---PKFF

Query:  SHWDPDSKMFTLQLYFK
        +HWD  +K FTLQLYFK
Subjt:  SHWDPDSKMFTLQLYFK

Q62203 Splicing factor 3A subunit 2

9.8e-69

55.26

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Query:  GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSV-
        G K GSGG AS+     DRRERLR+LALETID+ KDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQTNLA+RAA+EAKEAPAQP P + KV V 
Subjt:  GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSV-

Query:  --LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFT
          +KIGRPGY+VTKQ D+E  Q+SLLFQI+YPEI +   PRHRFMS+YEQR++P D+R+QYLL AAEPYE IAFKVPS EIDK+  KF          F 
Subjt:  --LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFT

Query:  LQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLP----PPPSVMSNGPPRP--MPPPGGTPSIPPPPP
        LQ +FK +          P A  ++P+G P    PPPP     PP PP    P  +PPPP PG LP    PP     +GPP P  MPPP   P + PP P
Subjt:  LQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLP----PPPSVMSNGPPRP--MPPPGGTPSIPPPPP

Query:  V------GNNTMANFTQMNRPPMPPPPQGFQGQGARQPPPPP
        V      G +  A       P + PP  G         PP P
Subjt:  V------GNNTMANFTQMNRPPMPPPPQGFQGQGARQPPPPP

Q6AXT8 Splicing factor 3A subunit 2

7.0e-75

56.43

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Query:  GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSV-
        G K GSGG AS+     DRRERLR+LALETID+ KDPYFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQTNLA+RAA+EAKEAPAQP P K KV V 
Subjt:  GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSV-

Query:  --LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFT
          +KIGRPGY+VTKQ D+E  Q+SLLFQI+YPEI +   PRHRFMS+YEQR++P D+R+QYLL AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F 
Subjt:  --LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFT

Query:  LQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLP----PPPSVMSNGPPRP--MPPPGGTPSIPPPPP
        LQ +FK +          P A  ++P+G P    PPPP     PP PP    P  +PPPP PG LP    PP     +GPP P  MPPP   P + PP P
Subjt:  LQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLP----PPPSVMSNGPPRP--MPPPGGTPSIPPPPP

Query:  V------GNNTMANFTQMNRPPMPPPPQGFQGQGARQPPPPP
        V      G +  A       P + PP  G         PP P
Subjt:  V------GNNTMANFTQMNRPPMPPPPQGFQGQGARQPPPPP

Arabidopsis top hits

e value

%identity

Alignment

AT2G32600.1 hydroxyproline-rich glycoprotein family protein

7.1e-115

77.93

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Query:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR
        MDREWGSKPGSGGAAS QNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAK+AP +PQP KR
Subjt:  MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKR

Query:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD
         VSV   +KIGRPGYRVTKQ+D E +QRSLLFQIEYPEIED  KPRHRFMSSYEQ+VQP+DK YQYLLFAAEPYEIIAFKVPSTE+DKSTPKFFSHWDPD
Subjt:  KVSV---LKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD

Query:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGG
        SKMFTLQ+YFK    E NKPQ+   ANG                 PPPPPPPP Q  P   PPPP  G  PPPP  M+N   RPMPP GG
Subjt:  SKMFTLQLYFKSKPQEANKPQTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGG

AT5G07740.1 actin binding

2.3e-04

51.28

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Query:  GAPPRPLPPPP---QAPPPPPPPPQQGAPPRVPPPPMP-GSLPPPP----SVMSNGPPRPMPPP--GGTPSIPPPPPVGNNTMANFTQMNRPPMPPPPQG
        G+PP P PPPP     PPPPPPPP  G+PP  PPPP   GS PPPP    S +S+ PP P PPP  GG P  PPPPP+              P PPPP  
Subjt:  GAPPRPLPPPP---QAPPPPPPPPQQGAPPRVPPPPMP-GSLPPPP----SVMSNGPPRPMPPP--GGTPSIPPPPPVGNNTMANFTQMNRPPMPPPPQG

Query:  FQGQGARQPPPPPPNMG
          G GA  PPPPPP  G
Subjt:  FQGQGARQPPPPPPNMG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACAGAGAGTGGGGCTCGAAGCCGGGAAGTGGAGGTGCGGCCTCTGCACAGAATGAAGCTATTGATCGGAGAGAGCGTCTTCGGCGGCTTGCTCTCGAGACCATCGA
TCTCGCCAAGGATCCCTACTTTATGCGCAATCATCTTGGAAGTTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGAAATTACTTGGCGCACACGCAGGGGA
AGCGGCATCAGACTAATTTGGCCAAGAGAGCAGCCCGCGAAGCCAAGGAAGCTCCTGCTCAACCTCAGCCCCACAAGCGGAAGGTCTCTGTTCTTAAAATTGGAAGGCCT
GGTTATAGAGTCACAAAGCAATTTGATTCTGAGACAAAGCAGAGATCTCTGCTTTTCCAGATTGAATATCCAGAAATTGAAGACCTAGCAAAGCCAAGGCATCGGTTTAT
GTCCTCTTATGAGCAGCGGGTGCAACCCTTTGATAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCATATGAGATAATTGCGTTCAAGGTTCCAAGCACAGAGATTG
ACAAATCTACACCAAAATTCTTCTCACACTGGGATCCTGACTCAAAAATGTTCACGTTGCAGTTGTATTTCAAATCCAAGCCACAAGAGGCAAACAAGCCACAGACTGTG
CCTGCAGCCAATGGAACGGTGCCATCTGGTGCACCACCGAGGCCACTTCCCCCGCCACCTCAAGCTCCACCACCACCACCACCTCCACCACAGCAAGGAGCGCCACCGAG
AGTTCCTCCTCCTCCAATGCCGGGGTCCTTGCCGCCTCCCCCTTCTGTAATGTCTAATGGTCCTCCCAGACCAATGCCTCCTCCCGGTGGGACTCCGTCGATCCCTCCAC
CGCCTCCAGTTGGCAATAACACAATGGCAAATTTCACTCAGATGAATAGACCTCCCATGCCACCTCCTCCACAGGGCTTCCAAGGTCAGGGTGCTCGTCAGCCACCACCG
CCGCCACCCAATATGGGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVLKIGRP
GYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPQTV
PAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMSNGPPRPMPPPGGTPSIPPPPPVGNNTMANFTQMNRPPMPPPPQGFQGQGARQPPP
PPPNMG

MS019612 (gene) of Bitter gourd (TR) v1 genome