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MS019643 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019643
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCytochrome f
Genome locationscaffold729:1230336..1230504
RNA-Seq ExpressionMS019643
SyntenyMS019643
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0031361 - integral component of thylakoid membrane (cellular component)
GO:0005506 - iron ion binding (molecular function)
GO:0009055 - electron transfer activity (molecular function)
GO:0020037 - heme binding (molecular function)
InterPro domainsIPR002325 - Cytochrome f
IPR036826 - Cytochrome f large domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFS35562.1 cytochrome f, partial [Fragaria pentaphylla]1.0e-0971.67Show/hide
Query:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
        + ILS +PA NKDVHFLKYPIYVG N G G     GSKSNNNVYNA  +GI SKIIRKEK
Subjt:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
YP_009040220.1 cytochrome f [Fragaria iinumae]1.0e-0971.67Show/hide
Query:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
        + ILS +PA NKDVHFLKYPIYVG N G G     GSKSNNNVYNA  +GI SKIIRKEK
Subjt:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
YP_009170440.1 cytochrome f [Humulus lupulus]1.0e-0971.67Show/hide
Query:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
        + ILS +PA NKDVHFLKYPIYVG N G G     GSKSNNNVYNA  +GI SKIIRKEK
Subjt:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
YP_009669416.1 cytochrome f [Krameria bicolor]1.0e-0973.33Show/hide
Query:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNAGS-GIASKIIRKEK
        + ILS NPA NKDVHFLKYPIYVG N G G     GSKSNN VYNA S GI SKIIRKEK
Subjt:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNAGS-GIASKIIRKEK
YP_009740380.1 component of cytochrome b6/f complex [Thymus mongolicus]1.0e-0971.67Show/hide
Query:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
        + ILS +PA NKDVHFLKYPIYVG N G G     GSKSNN VYNA G+GI SKIIRKEK
Subjt:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
TrEMBL top hitse value%identityAlignment
A0A0S1EHT6 Cytochrome f5.0e-1071.67Show/hide
Query:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
        + ILS +PA NKDVHFLKYPIYVG N G G     GSKSNN VYNA G+GI SKIIRKEK
Subjt:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
A0A0U2H189 Cytochrome f5.0e-1071.67Show/hide
Query:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
        + ILS +PA NKDVHFLKYPIYVG N G G     GSKSNNNVYNA  +GI SKIIRKEK
Subjt:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
J7IGG1 Cytochrome f5.0e-1071.67Show/hide
Query:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
        + ILS +PA NKDVHFLKYPIYVG N G G     GSKSNNNVYNA  +GI SKIIRKEK
Subjt:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
J7IGY8 Cytochrome f5.0e-1071.67Show/hide
Query:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
        + ILS +PA NKDVHFLKYPIYVG N G G     GSKSNNNVYNA  +GI SKIIRKEK
Subjt:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
J7INK8 Cytochrome f5.0e-1071.67Show/hide
Query:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
        + ILS +PA NKDVHFLKYPIYVG N G G     GSKSNNNVYNA  +GI SKIIRKEK
Subjt:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
SwissProt top hitse value%identityAlignment
A0A348 Cytochrome f6.7e-1270Show/hide
Query:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
        + ILS +PA  KDVHFLKYPIYVG N G G     GSKSNN VYNA G+GI SKIIRKEK
Subjt:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
B0Z4N9 Cytochrome f6.7e-1270Show/hide
Query:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
        + ILS +PA NKDVHFLKYPIYVG N G G     GSKSNN VYNA  +GI SKIIRKEK
Subjt:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
B0Z4X3 Cytochrome f6.7e-1270Show/hide
Query:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
        + ILS +PA NKDVHFLKYPIYVG N G G     GSKSNN VYNA  +GI SKIIRKEK
Subjt:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
Q09X04 Cytochrome f5.1e-1271.67Show/hide
Query:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNAGS-GIASKIIRKEK
        + ILS +PA  KDVHFLKYPIYVG N G G     GSKSNNNVYNA S GI SKIIRKEK
Subjt:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNAGS-GIASKIIRKEK
Q2QD76 Cytochrome f6.7e-1270Show/hide
Query:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
        + ILS +PA  KDVHFLKYPIYVG N G G     GSKSNNNVYNA  +GI SKIIRKEK
Subjt:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
Arabidopsis top hitse value%identityAlignment
ATCG00540.1 photosynthetic electron transfer A3.1e-1266.67Show/hide
Query:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK
        + IL+ +PA NKDVHFLKYPIYVG N G G     GSKSNN VYNA   GI SKI+RKEK
Subjt:  YEILSHNPAPNKDVHFLKYPIYVGEN-GNG----SGSKSNNNVYNA-GSGIASKIIRKEK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATGAAATTCTTTCCCATAACCCTGCGCCTAATAAAGATGTTCACTTCTTAAAATATCCTATATACGTAGGTGAGAACGGGAATGGGTCCGGAAGTAAGAGTAATAATAA
TGTTTATAATGCTGGTAGCGGTATAGCAAGCAAAATAATAAGAAAAGAAAAA
mRNA sequenceShow/hide mRNA sequence
TATGAAATTCTTTCCCATAACCCTGCGCCTAATAAAGATGTTCACTTCTTAAAATATCCTATATACGTAGGTGAGAACGGGAATGGGTCCGGAAGTAAGAGTAATAATAA
TGTTTATAATGCTGGTAGCGGTATAGCAAGCAAAATAATAAGAAAAGAAAAA
Protein sequenceShow/hide protein sequence
YEILSHNPAPNKDVHFLKYPIYVGENGNGSGSKSNNNVYNAGSGIASKIIRKEK