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MS019665 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019665
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-binding protein S1FA-like
Genome locationscaffold729:1384143..1384406
RNA-Seq ExpressionMS019665
SyntenyMS019665
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006779 - DNA binding protein S1FA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651038.1 hypothetical protein Csa_000825 [Cucumis sativus]6.1e-2888.46Show/hide
Query:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        +A A+ +GNVIND+EAKGFNP LIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKM++ERLKQGVSAPGE
Subjt:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

XP_004137812.1 DNA-binding protein S1FA [Cucumis sativus]6.1e-2888.46Show/hide
Query:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        +A A+ +GNVIND+EAKGFNP LIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKM++ERLKQGVSAPGE
Subjt:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

XP_008442666.1 PREDICTED: DNA-binding protein S1FA-like [Cucumis melo]1.8e-2788.46Show/hide
Query:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        +A A+ +GNVINDVEAKGFNP LIVLLLVGGLLL FLVGNYALYLYAQKNLPPKKKKPVSKKKM++ERLKQGVSAPGE
Subjt:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

XP_022145490.1 DNA-binding protein S1FA-like [Momordica charantia]3.3e-2992.31Show/hide
Query:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        +A ++ +GNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
Subjt:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

XP_038905724.1 DNA-binding protein S1FA-like [Benincasa hispida]4.7e-2889.74Show/hide
Query:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        +A A+ +GNVINDVEAKGFNP LIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKM++ERLKQGVSAPGE
Subjt:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

TrEMBL top hitse value%identityAlignment
A0A0A0LAW3 DNA-binding protein S1FA3.0e-2888.46Show/hide
Query:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        +A A+ +GNVIND+EAKGFNP LIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKM++ERLKQGVSAPGE
Subjt:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

A0A1S3B680 DNA-binding protein S1FA-like8.6e-2888.46Show/hide
Query:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        +A A+ +GNVINDVEAKGFNP LIVLLLVGGLLL FLVGNYALYLYAQKNLPPKKKKPVSKKKM++ERLKQGVSAPGE
Subjt:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

A0A6J1CUM0 DNA-binding protein S1FA-like1.6e-2992.31Show/hide
Query:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        +A ++ +GNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
Subjt:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

A0A6J1IZV9 DNA-binding protein S1FA-like2.5e-2787.18Show/hide
Query:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        +A A+ +GNVINDVEAKG NP LIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKM+++RLKQGVSAPGE
Subjt:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

A0A6J1KWU8 DNA-binding protein S1FA-like isoform X11.5e-2785.9Show/hide
Query:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        +A A+ +GNV+NDV AKGFNPGL+VLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVSKKKM++ERLKQGVSAPGE
Subjt:  VAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

SwissProt top hitse value%identityAlignment
P42551 DNA-binding protein S1FA11.3e-2076.56Show/hide
Query:  EAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        EAKG NPGLIVLL+VGG LL+FL+ NY LY+YAQKNLPP+KKKPVSKKK+++E+LKQGV  PGE
Subjt:  EAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

P42552 DNA-binding protein S1FA9.5e-2479.41Show/hide
Query:  INDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        +N+VEAKG NPGLIVLL++GGLLL FLVGN+ LY YAQKNLPPKKKKP+SKKKM++ERLKQGV+ PGE
Subjt:  INDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

P42553 DNA-binding protein S1FA11.7e-2066.67Show/hide
Query:  ASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        A +  N+I +   KG NPG IVLL+V  LL++F VGNYALY+YAQK LPP+KKKPVSKKK+++E+LKQGVSAPGE
Subjt:  ASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

Q42337 DNA-binding protein S1FA21.7e-2072.31Show/hide
Query:  VEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        VEAKG NPGLIVLL++GGLL+ FL+ NY +Y+YAQKNLPP+KKKP+SKKK+++E+LKQGV  PGE
Subjt:  VEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

Q93VI0 DNA-binding protein S1FA32.0e-2176.92Show/hide
Query:  VEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        +E+KG NPGLIVLL++GGLLL FLVGN+ LY YAQKNLPP+KKKPVSKKKM+KE++KQGV  PGE
Subjt:  VEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

Arabidopsis top hitse value%identityAlignment
AT2G37120.1 S1FA-like DNA-binding protein1.2e-2172.31Show/hide
Query:  VEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        VEAKG NPGLIVLL++GGLL+ FL+ NY +Y+YAQKNLPP+KKKP+SKKK+++E+LKQGV  PGE
Subjt:  VEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

AT3G09735.1 S1FA-like DNA-binding protein1.4e-2276.92Show/hide
Query:  VEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        +E+KG NPGLIVLL++GGLLL FLVGN+ LY YAQKNLPP+KKKPVSKKKM+KE++KQGV  PGE
Subjt:  VEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

AT3G53370.1 S1FA-like DNA-binding protein9.1e-2276.56Show/hide
Query:  EAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        EAKG NPGLIVLL+VGG LL+FL+ NY LY+YAQKNLPP+KKKPVSKKK+++E+LKQGV  PGE
Subjt:  EAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE

AT3G53370.2 S1FA-like DNA-binding protein3.7e-0772.73Show/hide
Query:  YAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE
        +A KNLPP+KKKPVSKKK+++E+LKQGV  PGE
Subjt:  YAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTGAAGCTCATCGTGATGGTTTATTAATTGTGGCTCCTGCAAGTGAACAGGGAAATGTGATCAATGATGTTGAAGCAAAGGGATTCAATCCAGGGCTGATAGTACTGCT
GCTTGTTGGTGGGTTGCTGCTGATTTTCCTTGTAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAAAAGCCAGTATCTAAAAAGAAGA
TGAGGAAGGAAAGACTGAAGCAAGGAGTCTCTGCACCTGGAGAG
mRNA sequenceShow/hide mRNA sequence
TTTGAAGCTCATCGTGATGGTTTATTAATTGTGGCTCCTGCAAGTGAACAGGGAAATGTGATCAATGATGTTGAAGCAAAGGGATTCAATCCAGGGCTGATAGTACTGCT
GCTTGTTGGTGGGTTGCTGCTGATTTTCCTTGTAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAAAAGCCAGTATCTAAAAAGAAGA
TGAGGAAGGAAAGACTGAAGCAAGGAGTCTCTGCACCTGGAGAG
Protein sequenceShow/hide protein sequence
FEAHRDGLLIVAPASEQGNVINDVEAKGFNPGLIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMRKERLKQGVSAPGE