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MS019680 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019680
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNuclear transcription factor Y subunit B
Genome locationscaffold729:1491666..1492132
RNA-Seq ExpressionMS019680
SyntenyMS019680
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003956 - Transcription factor, NFYB/HAP3, conserved site
IPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137802.1 nuclear transcription factor Y subunit B-1 isoform X1 [Cucumis sativus]1.8e-5699.13Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD PASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE
        DYIDPLKTYLTKYRE
Subjt:  DYIDPLKTYLTKYRE

XP_022145604.1 nuclear transcription factor Y subunit B-1 isoform X1 [Momordica charantia]3.7e-57100Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE
        DYIDPLKTYLTKYRE
Subjt:  DYIDPLKTYLTKYRE

XP_022145605.1 nuclear transcription factor Y subunit B-1 isoform X2 [Momordica charantia]3.7e-57100Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE
        DYIDPLKTYLTKYRE
Subjt:  DYIDPLKTYLTKYRE

XP_022983508.1 nuclear transcription factor Y subunit B-1-like isoform X2 [Cucurbita maxima]1.8e-5699.13Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD PASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE
        DYIDPLKTYLTKYRE
Subjt:  DYIDPLKTYLTKYRE

XP_023529112.1 nuclear transcription factor Y subunit B-1-like isoform X1 [Cucurbita pepo subsp. pepo]1.8e-5699.13Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD PASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE
        DYIDPLKTYLTKYRE
Subjt:  DYIDPLKTYLTKYRE

TrEMBL top hitse value%identityAlignment
A0A6J1CUY4 nuclear transcription factor Y subunit B-1 isoform X21.8e-57100Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE
        DYIDPLKTYLTKYRE
Subjt:  DYIDPLKTYLTKYRE

A0A6J1CVR4 nuclear transcription factor Y subunit B-1 isoform X11.8e-57100Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE
        DYIDPLKTYLTKYRE
Subjt:  DYIDPLKTYLTKYRE

A0A6J1FB03 nuclear transcription factor Y subunit B-1-like isoform X18.9e-5799.13Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD PASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE
        DYIDPLKTYLTKYRE
Subjt:  DYIDPLKTYLTKYRE

A0A6J1J2H6 nuclear transcription factor Y subunit B-1-like isoform X18.9e-5799.13Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD PASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE
        DYIDPLKTYLTKYRE
Subjt:  DYIDPLKTYLTKYRE

A0A6J1J7Y3 nuclear transcription factor Y subunit B-1-like isoform X28.9e-5799.13Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD PASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE
        DYIDPLKTYLTKYRE
Subjt:  DYIDPLKTYLTKYRE

SwissProt top hitse value%identityAlignment
P25209 Nuclear transcription factor Y subunit B5.9e-5086.07Show/hide
Query:  MADGPASP--GGGSHESGEQSPR-----SNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWA
        MA+ PASP  GGGSHESG  SPR      +VREQDRFLPIANISRIMKKA+PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWA
Subjt:  MADGPASP--GGGSHESGEQSPR-----SNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWA

Query:  MATLGFEDYIDPLKTYLTKYRE
        MATLGFEDYI+PLK YL KYRE
Subjt:  MATLGFEDYIDPLKTYLTKYRE

Q60EQ4 Nuclear transcription factor Y subunit B-31.0e-4982.17Show/hide
Query:  MADGPASP--GGGSHESGEQSPR------------SNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN
        MADGP SP  GGGSHESG  SPR              VREQDRFLPIANISRIMKKA+PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN
Subjt:  MADGPASP--GGGSHESGEQSPR------------SNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN

Query:  GDDLLWAMATLGFEDYIDPLKTYLTKYRE
        GDDLLWAMATLGFEDYI+PLK YL KYRE
Subjt:  GDDLLWAMATLGFEDYIDPLKTYLTKYRE

Q67XJ2 Nuclear transcription factor Y subunit B-108.6e-4989.91Show/hide
Query:  GGGSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL
        GGGSHES G+QSPRS NVREQDRFLPIANISRIMK+ LP NGKIAKDAKET+QECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL
Subjt:  GGGSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL

Query:  KTYLTKYRE
        K YL +YRE
Subjt:  KTYLTKYRE

Q8VYK4 Nuclear transcription factor Y subunit B-82.1e-4784.87Show/hide
Query:  MADGPA-SPGG-GSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT
        MA+  A SPGG GSHES G+QSPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMAT
Subjt:  MADGPA-SPGG-GSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT

Query:  LGFEDYIDPLKTYLTKYRE
        LGFEDY++PLK YL +YRE
Subjt:  LGFEDYIDPLKTYLTKYRE

Q9SLG0 Nuclear transcription factor Y subunit B-12.6e-4579.13Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD P+SP G   ESG      +VREQDR+LPIANISRIMKKALP NGKI KDAK+TVQECVSEFISFITSEASDKCQ+EKRKT+NGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE
        DY++PLK YL +YRE
Subjt:  DYIDPLKTYLTKYRE

Arabidopsis top hitse value%identityAlignment
AT2G37060.1 nuclear factor Y, subunit B81.5e-4884.87Show/hide
Query:  MADGPA-SPGG-GSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT
        MA+  A SPGG GSHES G+QSPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMAT
Subjt:  MADGPA-SPGG-GSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT

Query:  LGFEDYIDPLKTYLTKYRE
        LGFEDY++PLK YL +YRE
Subjt:  LGFEDYIDPLKTYLTKYRE

AT2G37060.2 nuclear factor Y, subunit B81.5e-4884.87Show/hide
Query:  MADGPA-SPGG-GSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT
        MA+  A SPGG GSHES G+QSPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMAT
Subjt:  MADGPA-SPGG-GSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT

Query:  LGFEDYIDPLKTYLTKYRE
        LGFEDY++PLK YL +YRE
Subjt:  LGFEDYIDPLKTYLTKYRE

AT2G37060.3 nuclear factor Y, subunit B81.5e-4884.87Show/hide
Query:  MADGPA-SPGG-GSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT
        MA+  A SPGG GSHES G+QSPRS +VREQDRFLPIANISRIMK+ LPANGKIAKDAKE VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMAT
Subjt:  MADGPA-SPGG-GSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT

Query:  LGFEDYIDPLKTYLTKYRE
        LGFEDY++PLK YL +YRE
Subjt:  LGFEDYIDPLKTYLTKYRE

AT2G38880.2 nuclear factor Y, subunit B11.8e-4679.13Show/hide
Query:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE
        MAD P+SP G   ESG      +VREQDR+LPIANISRIMKKALP NGKI KDAK+TVQECVSEFISFITSEASDKCQ+EKRKT+NGDDLLWAMATLGFE
Subjt:  MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFE

Query:  DYIDPLKTYLTKYRE
        DY++PLK YL +YRE
Subjt:  DYIDPLKTYLTKYRE

AT3G53340.1 nuclear factor Y, subunit B106.1e-5089.91Show/hide
Query:  GGGSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL
        GGGSHES G+QSPRS NVREQDRFLPIANISRIMK+ LP NGKIAKDAKET+QECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL
Subjt:  GGGSHES-GEQSPRS-NVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL

Query:  KTYLTKYRE
        K YL +YRE
Subjt:  KTYLTKYRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATGGTCCGGCGAGTCCCGGCGGTGGAAGCCATGAGAGCGGCGAGCAGAGTCCGCGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCGATTGCGAATATTAG
CCGGATCATGAAGAAGGCTCTCCCTGCTAATGGGAAGATTGCCAAGGATGCTAAGGAGACCGTACAAGAATGCGTCTCTGAGTTCATCAGTTTTATTACCAGCGAGGCTA
GTGACAAATGCCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCCATGGCTACTCTTGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTG
ACGAAATACAGAGAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATGGTCCGGCGAGTCCCGGCGGTGGAAGCCATGAGAGCGGCGAGCAGAGTCCGCGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCGATTGCGAATATTAG
CCGGATCATGAAGAAGGCTCTCCCTGCTAATGGGAAGATTGCCAAGGATGCTAAGGAGACCGTACAAGAATGCGTCTCTGAGTTCATCAGTTTTATTACCAGCGAGGCTA
GTGACAAATGCCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCCATGGCTACTCTTGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTG
ACGAAATACAGAGAG
Protein sequenceShow/hide protein sequence
MADGPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYL
TKYRE