; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS019719 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019719
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGlycine rich RNA binding protein
Genome locationscaffold729:1745657..1747263
RNA-Seq ExpressionMS019719
SyntenyMS019719
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3957296.1 hypothetical protein CMV_017676 [Castanea mollissima]3.4e-5577.55Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE
        MAF S  RRVL G S  +SS+   Q Q+T+IRF +TLT+PKLF+S GLSRLTTD KL+EAFSPFGQLV+AKVITDRA+GRSKGFGFV+YA+IEEAEKARE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE

Query:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG
         MNAKFLDGWVIFVDPAKPREPRPPPQP  EP+E GFRTN+T+GWCG
Subjt:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG

RWR95450.1 RNA recognition motif domain-containing protein [Cinnamomum micranthum f. kanehirae]2.0e-5580.27Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE
        MA +SAFRRVLNGSS ASS+    Q+ F++IR  STLT PKLFVS GLSRLTTD+ LK+AFSPFGQL+EAKVITDR SGRSKGFGFV YA++EEAEKARE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE

Query:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG
        EMNAKFLDGWVIFVDPAKPREPRPPP+P  EP+E GFRTNKTIGWCG
Subjt:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG

XP_022145577.1 organelle RRM domain-containing protein 2, mitochondrial-like [Momordica charantia]7.2e-7499.32Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE
        MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVS GLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE

Query:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTEGFRTNKTIGWCG
        EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTEGFRTNKTIGWCG
Subjt:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTEGFRTNKTIGWCG

XP_023877122.1 organelle RRM domain-containing protein 2, mitochondrial [Quercus suber]1.3e-5476.87Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE
        MAF S  RRVL G S  +SS+   Q  +T+IRF +TLT+PKLF+S GLSRLTTD KL+EAFSPFGQLV+AKVITDRA+GRSKGFGFV+YA+IEEAEKARE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE

Query:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG
         MNAKFLDGWVIFVDPAKPREPRPPPQP  EP+E GFRTN+T+GWCG
Subjt:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG

XP_042943832.1 organelle RRM domain-containing protein 2, mitochondrial [Carya illinoinensis]1.3e-5477.55Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE
        MAF  + RR+L+GSS ASS L     Q+ +IRF +TLT+PKLF+S GLSRLTTD+KLKEAFSPFGQL++AKVI DRA+GRSKGFGFVTYASIEEAEKARE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE

Query:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG
         MNAKFLDGWVIFVDPAKPREPRPPPQP  EP++ GFRTNKT+GWCG
Subjt:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG

TrEMBL top hitse value%identityAlignment
A0A3S3NHY1 RNA recognition motif domain-containing protein9.5e-5680.27Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE
        MA +SAFRRVLNGSS ASS+    Q+ F++IR  STLT PKLFVS GLSRLTTD+ LK+AFSPFGQL+EAKVITDR SGRSKGFGFV YA++EEAEKARE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE

Query:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG
        EMNAKFLDGWVIFVDPAKPREPRPPP+P  EP+E GFRTNKTIGWCG
Subjt:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG

A0A5B7A8G9 RRM domain-containing protein4.7e-5578.23Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE
        MAFASAFRR+LNGSS  SS +     QF +IR  STLT PKLFVS GLSRLTTD+KLKEAFSPFGQL+EAKVI DRASGRSKGFGFVTYA+I++A KA+E
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE

Query:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG
         MNAK+LDGWVIFVDPAKPREPRPPPQP  +P+E GFRTNKT+GWCG
Subjt:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG

A0A5B7BY51 RRM domain-containing protein1.1e-5478.91Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE
        MAFAS+FRR LNGSS  SS L     QF +IR  STL+ PKLFVS GLSRLTTD+KLKE FS FGQL+EAKVI DRASGRSKGFGFVTYA+IE+AEKARE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE

Query:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG
         MNAK+LDGWVIFVDPAKPREPRPPPQP  +P+E GFRTNKTIGWCG
Subjt:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG

A0A6J1CX06 organelle RRM domain-containing protein 2, mitochondrial-like3.5e-7499.32Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE
        MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVS GLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE

Query:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTEGFRTNKTIGWCG
        EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTEGFRTNKTIGWCG
Subjt:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTEGFRTNKTIGWCG

A0A7N2LNA5 RRM domain-containing protein6.2e-5576.87Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE
        MAF S  RRVL G S  +SS+   Q  +T+IRF +TLT+PKLF+S GLSRLTTD KL+EAFSPFGQLV+AKVITDRA+GRSKGFGFV+YA+IEEAEKARE
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE

Query:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG
         MNAKFLDGWVIFVDPAKPREPRPPPQP  EP+E GFRTN+T+GWCG
Subjt:  EMNAKFLDGWVIFVDPAKPREPRPPPQPNHEPTE-GFRTNKTIGWCG

SwissProt top hitse value%identityAlignment
C0HFE5 Organelle RRM domain-containing protein 1, chloroplastic5.1e-1450Show/hide
Query:  KLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPR
        +LFV+ GLS  T++  L+ AF PFG+LVE K+I DR S RSKG+ FV Y + E    A + MN + ++GW+I VD AK R
Subjt:  KLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPR

Q9FFZ6 Small RNA-binding protein 11, chloroplastic1.1e-1651Show/hide
Query:  APKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP
        A KLF+  GLS  TT+  L EAFS  GQ+VEA+++ DR S RSKGFGFVT+AS +EA+KA  E N + L+G  IFVD AK ++           R PP P
Subjt:  APKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP

Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial8.1e-2055.06Show/hide
Query:  LFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPNH
        LFVS GLS+ TT + L+ AF+ FG++ +AKV+TDR SG SKGFGFV YA++E++ K    M+ KFLDGWVIF + A+PRE     QP +
Subjt:  LFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPNH

Q9FX45 Organelle RRM domain-containing protein 6, chloroplastic6.6e-1444.76Show/hide
Query:  KLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPREP-------RPPPQPNHEPT
        KL+VS GLS  TT+D L++ F  FG L+   ++ D+ + R KGF F+ Y + EEA KA + M+ KFLDG VIFV+ AK R         R  P+P  +P 
Subjt:  KLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPREP-------RPPPQPNHEPT

Query:  EGFRT
          FRT
Subjt:  EGFRT

Q9FZ84 Glycine-rich RNA-binding protein 6, mitochondrial1.7e-1454.88Show/hide
Query:  TLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPA
        +LT  K+FV  GLS  T  + LKEAF  FG++V+A V+ DR SG S+GFGFVTY SIE A  A + M  K LDG +I V PA
Subjt:  TLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPA

Arabidopsis top hitse value%identityAlignment
AT1G18630.1 glycine-rich RNA-binding protein 61.2e-1554.88Show/hide
Query:  TLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPA
        +LT  K+FV  GLS  T  + LKEAF  FG++V+A V+ DR SG S+GFGFVTY SIE A  A + M  K LDG +I V PA
Subjt:  TLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPA

AT2G27330.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.8e-1541.96Show/hide
Query:  LQQFQFQ-FTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKP
        L QF ++ FT + F  + ++  LFV  G+S  +T++ L +AFS +GQ+++  VI D+   R KGF +VT++S EEAEKA  E+NA+ +DG V+ +D  K 
Subjt:  LQQFQFQ-FTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKP

Query:  REPRPP-PQPNH
         +  PP  +PNH
Subjt:  REPRPP-PQPNH

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.4e-4566Show/hide
Query:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE
        MAF S+FRR++ GSS   SS          +R  STLT+P+LFVS GLSRLTT++KL++AF+ FGQLV+A+VITDR SGRSKGFGFVTYA+IE+AEKA+ 
Subjt:  MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKARE

Query:  EMNAKFLDGWVIFVDPAKPREPRPPPQ-----PNHEPTEGFRTNKTIGWC
        EMNAKFLDGWVIFVDPA+PREPR P Q     P+ E   GF TNKTIGWC
Subjt:  EMNAKFLDGWVIFVDPAKPREPRPPPQ-----PNHEPTEGFRTNKTIGWC

AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein7.8e-1851Show/hide
Query:  APKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP
        A KLF+  GLS  TT+  L EAFS  GQ+VEA+++ DR S RSKGFGFVT+AS +EA+KA  E N + L+G  IFVD AK ++           R PP P
Subjt:  APKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPRE----------PRPPPQP

AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.8e-2155.06Show/hide
Query:  LFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPNH
        LFVS GLS+ TT + L+ AF+ FG++ +AKV+TDR SG SKGFGFV YA++E++ K    M+ KFLDGWVIF + A+PRE     QP +
Subjt:  LFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPNH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTCGCTTCTGCCTTTCGACGAGTTCTCAATGGATCTTCCTTCGCTTCCTCTTCTCTTCAGCAATTCCAATTCCAATTCACCGCCATTCGTTTCGGTTCCACTCT
CACAGCTCCCAAACTCTTCGTTAGCGCAGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAGCTTGTTGAAGCAAAAGTTATTA
CTGATCGAGCCTCTGGAAGATCAAAGGGCTTCGGTTTTGTTACTTATGCAAGCATTGAGGAAGCCGAGAAGGCGAGAGAAGAAATGAATGCCAAGTTCCTGGATGGGTGG
GTTATTTTTGTTGACCCAGCCAAACCAAGGGAGCCTAGGCCGCCTCCGCAACCAAACCACGAGCCTACGGAAGGTTTCAGAACAAATAAGACGATCGGTTGGTGCGGT
mRNA sequenceShow/hide mRNA sequence
ATGGCGTTCGCTTCTGCCTTTCGACGAGTTCTCAATGGATCTTCCTTCGCTTCCTCTTCTCTTCAGCAATTCCAATTCCAATTCACCGCCATTCGTTTCGGTTCCACTCT
CACAGCTCCCAAACTCTTCGTTAGCGCAGGTCTTTCAAGACTAACTACAGATGATAAGCTGAAGGAGGCCTTTTCTCCTTTTGGCCAGCTTGTTGAAGCAAAAGTTATTA
CTGATCGAGCCTCTGGAAGATCAAAGGGCTTCGGTTTTGTTACTTATGCAAGCATTGAGGAAGCCGAGAAGGCGAGAGAAGAAATGAATGCCAAGTTCCTGGATGGGTGG
GTTATTTTTGTTGACCCAGCCAAACCAAGGGAGCCTAGGCCGCCTCCGCAACCAAACCACGAGCCTACGGAAGGTTTCAGAACAAATAAGACGATCGGTTGGTGCGGT
Protein sequenceShow/hide protein sequence
MAFASAFRRVLNGSSFASSSLQQFQFQFTAIRFGSTLTAPKLFVSAGLSRLTTDDKLKEAFSPFGQLVEAKVITDRASGRSKGFGFVTYASIEEAEKAREEMNAKFLDGW
VIFVDPAKPREPRPPPQPNHEPTEGFRTNKTIGWCG