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MS019806 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019806
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncoiled-coil domain-containing protein 12-like
Genome locationscaffold266:31379..33551
RNA-Seq ExpressionMS019806
SyntenyMS019806
Gene Ontology termsNA
InterPro domainsIPR013169 - mRNA splicing factor Cwf18-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584286.1 Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]1.2e-5993.23Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN
        MATE+DSVEQVAAARKERLRALRAAQELLNT DEK SGGEDK+NG  ED EETNLSMKFRNYVPHDKELQEGKL PPVLPKFEDPVA EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM

XP_022155130.1 coiled-coil domain-containing protein 12 isoform X1 [Momordica charantia]2.1e-6499.25Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN
        MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVA+EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM

XP_022955111.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata]2.7e-5992.48Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERLRALRAAQELLN PDEKTSGGED++NG   DTEE NL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVA EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM

XP_022994277.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima]1.6e-5992.48Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERLRALR AQELLN PDEKTSGGED++NG   DTEETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVA EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM

XP_023542240.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]1.8e-6093.98Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERLRALRAAQELLN PDEKTSGGEDK+NG   DTEETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVA EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM

TrEMBL top hitse value%identityAlignment
A0A0A0LR08 Uncharacterized protein1.4e-5890.23Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN
        MATEEDSVEQVAAARKERL+ALRAAQELLN  DEK SGGEDK+NG  ED++ETNL+MKFRNYVPHDKELQEGKLAPPVLPKFEDPV  EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLM
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM

A0A6J1DLK0 coiled-coil domain-containing protein 12 isoform X11.0e-6499.25Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN
        MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVA+EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM

A0A6J1E719 coiled-coil domain-containing protein 12-like4.6e-5789.71Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVI---EDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDP
        MATE+DSVEQVAAARKERLRALRAAQELLN  DEK SGGEDK+NG     ED EETNLSMKFRNYVPHDKELQEGKL PP LPKFEDPVA EPPQLKEDP
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVI---EDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDP

Query:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
        FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
Subjt:  FVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM

A0A6J1GST8 coiled-coil domain-containing protein 12-like1.3e-5992.48Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERLRALRAAQELLN PDEKTSGGED++NG   DTEE NL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVA EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM

A0A6J1JYP1 coiled-coil domain-containing protein 12-like isoform X17.6e-6092.48Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN
        MATEEDSVEQVAAAR+ERLRALR AQELLN PDEKTSGGED++NG   DTEETNL MKFRNYVPHDKELQEGKLAPPVLPKFEDPVA EPPQLKEDPFVN
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
        IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM

SwissProt top hitse value%identityAlignment
Q8R344 Coiled-coil domain-containing protein 121.9e-1236.57Show/hide
Query:  VEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEET--NLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFV------
        +E+ A  RKERL+ALR       T  +    GE +   + E+ EE   +  ++ RNYVP D++L+  ++        E+ V ++    K +P +      
Subjt:  VEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEET--NLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFV------

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
        N+AP+KP+WDL+RDV KKL+KLE+RTQ+A+ +L+
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM

Q8WUD4 Coiled-coil domain-containing protein 121.5e-1236.57Show/hide
Query:  VEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTE--ETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFV------
        +E+ A  RKERL+ALR       T  +    GE K   + E+ E  E +  ++ RNYVP D++L++ ++        E+ V ++    K +P +      
Subjt:  VEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTE--ETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFV------

Query:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
        N+AP+KP+WDL+RDV KKL+KL++RTQ+A+ +L+
Subjt:  NIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM

Q9UU80 Pre-mRNA-splicing factor cwf182.0e-0428.68Show/hide
Query:  SVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQ-------------L
        S+++VA +RK+RL  LR  ++L N    KT   ++    VIE           RNY P  +  + G + PP + +  + ++ E  +             +
Subjt:  SVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQ-------------L

Query:  KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAL
        +E   V + PKKP WDL RD+++++  LE + Q A+
Subjt:  KEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKAL

Arabidopsis top hitse value%identityAlignment
AT3G05070.1 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).1.0e-4068.15Show/hide
Query:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPP--QLKEDPF
        MA+E++S+EQ AAARKE L+ALRAAQEL           E K++G  E  EE   +MKFRNYVP  KELQ+GKLAPP LPKFEDP+   PP  + KEDPF
Subjt:  MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPP--QLKEDPF

Query:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM
        VNIAPKKPNWDLRRDVQKKLDKLERRTQKA++KLM
Subjt:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACTGAAGAAGACTCTGTCGAACAAGTTGCTGCAGCTCGTAAAGAGAGATTGAGAGCTCTCAGAGCTGCTCAGGAATTGTTAAACACGCCGGATGAGAAGACTTC
TGGAGGCGAGGATAAAGATAATGGTGTTATTGAAGATACTGAAGAAACTAATCTTAGTATGAAATTTCGGAACTATGTCCCTCATGATAAAGAGCTTCAGGAGGGTAAAC
TTGCCCCACCTGTATTGCCAAAGTTTGAGGACCCTGTTGCCGATGAACCTCCACAATTAAAAGAGGATCCATTTGTAAATATTGCCCCAAAGAAACCAAACTGGGACCTC
AGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCACTATATAAGCTTATG
mRNA sequenceShow/hide mRNA sequence
ATGGCTACTGAAGAAGACTCTGTCGAACAAGTTGCTGCAGCTCGTAAAGAGAGATTGAGAGCTCTCAGAGCTGCTCAGGAATTGTTAAACACGCCGGATGAGAAGACTTC
TGGAGGCGAGGATAAAGATAATGGTGTTATTGAAGATACTGAAGAAACTAATCTTAGTATGAAATTTCGGAACTATGTCCCTCATGATAAAGAGCTTCAGGAGGGTAAAC
TTGCCCCACCTGTATTGCCAAAGTTTGAGGACCCTGTTGCCGATGAACCTCCACAATTAAAAGAGGATCCATTTGTAAATATTGCCCCAAAGAAACCAAACTGGGACCTC
AGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCACTATATAAGCTTATG
Protein sequenceShow/hide protein sequence
MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFRNYVPHDKELQEGKLAPPVLPKFEDPVADEPPQLKEDPFVNIAPKKPNWDL
RRDVQKKLDKLERRTQKALYKLM