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MS019822 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019822
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold50:174793..174972
RNA-Seq ExpressionMS019822
SyntenyMS019822
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3671354.1 hypothetical protein FXO37_08084 [Capsicum annuum]2.2e-0551.02Show/hide
Query:  DHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSS
        D+N+Y+ SGASNH+  +  N+I L  Y G DK++VG G+KL I+HIG++
Subjt:  DHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSS

KAG5570128.1 hypothetical protein H5410_059894 [Solanum commersonii]5.0e-0543.08Show/hide
Query:  VVDHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFL-----PSHLKNV
        +VD++ +  SGA+NHV +D +++   ++Y G+D++ VG G KLFI+HIGSS L     P HL  +
Subjt:  VVDHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFL-----PSHLKNV

POO00818.1 hypothetical protein TorRG33x02_034490 [Trema orientale]5.9e-0647.76Show/hide
Query:  VVDHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFLPS-------HLKNV
        V+D + Y  SGA+NHVIA+  N+    +YGGKDK++VG G  L I+HIG S L +       HLKN+
Subjt:  VVDHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFLPS-------HLKNV

TXG59841.1 hypothetical protein EZV62_014414 [Acer yangbiense]4.5e-0648.33Show/hide
Query:  VVDHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFLPSHLKNV
        V D N YI SGA+NH+  D+NN+   SEY G D++ VG G  L ISH+GS  L S++ ++
Subjt:  VVDHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFLPSHLKNV

TYK05754.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.5e-0646.15Show/hide
Query:  VVDHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFLPS-----HLKNV
        V++ N YI SGA+NH+  +Y+N+ + SEY G +K+MVG G+ L IS+IG+++L       +LKNV
Subjt:  VVDHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFLPS-----HLKNV

TrEMBL top hitse value%identityAlignment
A0A2G2YGV1 Uncharacterized protein1.1e-0551.02Show/hide
Query:  DHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSS
        D+N+Y+ SGASNH+  +  N+I L  Y G DK++VG G+KL I+HIG++
Subjt:  DHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSS

A0A2P5FSN1 Uncharacterized protein2.8e-0647.76Show/hide
Query:  VVDHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFLPS-------HLKNV
        V+D + Y  SGA+NHVIA+  N+    +YGGKDK++VG G  L I+HIG S L +       HLKN+
Subjt:  VVDHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFLPS-------HLKNV

A0A5C7HRZ7 Uncharacterized protein2.2e-0648.33Show/hide
Query:  VVDHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFLPSHLKNV
        V D N YI SGA+NH+  D+NN+   SEY G D++ VG G  L ISH+GS  L S++ ++
Subjt:  VVDHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFLPSHLKNV

A0A5D3C373 Retrovirus-related Pol polyprotein from transposon TNT 1-942.2e-0646.15Show/hide
Query:  VVDHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFLPS-----HLKNV
        V++ N YI SGA+NH+  +Y+N+ + SEY G +K+MVG G+ L IS+IG+++L       +LKNV
Subjt:  VVDHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFLPS-----HLKNV

A0A803PPY9 Uncharacterized protein1.4e-0552.63Show/hide
Query:  VVDHNL-YIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFLPSH
        VVD +L +  SGASNH+ AD + +    EYGGK+ V VG GN+L ISHIGS +L ++
Subjt:  VVDHNL-YIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFLPSH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTGTTGATCACAACTTGTATATTAAAAGTGGAGCTTCAAACCACGTTATTGCTGATTACAACAACGTGATTCATCTTTCTGAATATGGTGGTAAGGATAAAGTA
ATGGTTGGTAAGGGTAATAAGCTATTTATTTCTCATATTGGATCTTCCTTTTTACCTTCACATCTTAAAAACGTT
mRNA sequenceShow/hide mRNA sequence
GTTGTTGATCACAACTTGTATATTAAAAGTGGAGCTTCAAACCACGTTATTGCTGATTACAACAACGTGATTCATCTTTCTGAATATGGTGGTAAGGATAAAGTA
ATGGTTGGTAAGGGTAATAAGCTATTTATTTCTCATATTGGATCTTCCTTTTTACCTTCACATCTTAAAAACGTT
Protein sequenceShow/hide protein sequence
VVDHNLYIKSGASNHVIADYNNVIHLSEYGGKDKVMVGKGNKLFISHIGSSFLPSHLKNV