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MS019917 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019917
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box/LRR-repeat protein At5g63520
Genome locationscaffold22:549264..549515
RNA-Seq ExpressionMS019917
SyntenyMS019917
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573137.1 F-box/LRR-repeat protein, partial [Cucurbita argyrosperma subsp. sororia]8.5e-1967.09Show/hide
Query:  MEKAIGARGVTAGGS---FPVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLL
        ME  IGA GV  GG     P+N DIL NILGRLPAR FASA CVCKTWN +CNRIL RPKF+SAVSLNPS  V +  +L
Subjt:  MEKAIGARGVTAGGS---FPVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLL
XP_022137117.1 F-box/LRR-repeat protein At5g63520 [Momordica charantia]1.8e-3293.42Show/hide
Query:  MEKAIGARGVTAGGSFPVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLL
        MEKAIGARGVTAGGSFPVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDV +  +L
Subjt:  MEKAIGARGVTAGGSFPVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLL
XP_022955211.1 F-box/LRR-repeat protein At5g63520-like [Cucurbita moschata]8.5e-1967.09Show/hide
Query:  MEKAIGARGVTAGGS---FPVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLL
        ME  IGA GV  GG     P+N DIL NILGRLPAR FASA CVCKTWN +CNRIL RPKF+SAVSLNPS  V +  +L
Subjt:  MEKAIGARGVTAGGS---FPVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLL
XP_022994367.1 F-box/LRR-repeat protein At5g63520-like [Cucurbita maxima]1.1e-1866.25Show/hide
Query:  MEKAIGARGVTAGGSF----PVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLL
        ME  IGA GV  GG      P+N DIL NI+GRLPAR FASAACVCKTWN +CNRIL RPKF+SAVSLNPS  V +  +L
Subjt:  MEKAIGARGVTAGGSF----PVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLL
XP_023542621.1 F-box/LRR-repeat protein At5g63520-like [Cucurbita pepo subsp. pepo]1.4e-1864.29Show/hide
Query:  MEKAIGARGVTAGGS--------FPVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLL
        ME  IGA GV  GG          P+N DIL NILGRLPAR FASAACVCKTWN +CNRIL RPKF+SAVSLNPS  V +  +L
Subjt:  MEKAIGARGVTAGGS--------FPVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLL
TrEMBL top hitse value%identityAlignment
A0A6J1C7B9 F-box/LRR-repeat protein At5g635208.5e-3393.42Show/hide
Query:  MEKAIGARGVTAGGSFPVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLL
        MEKAIGARGVTAGGSFPVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDV +  +L
Subjt:  MEKAIGARGVTAGGSFPVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLL
A0A6J1EDN6 F-box/LRR-repeat protein At5g63520-like isoform X16.8e-1477.36Show/hide
Query:  VNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDV
        +N DILHNI  RLPAR FA+AACV KTWN  CNRIL RPKFASAVSLNPS  V
Subjt:  VNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDV
A0A6J1GT60 F-box/LRR-repeat protein At5g63520-like4.1e-1967.09Show/hide
Query:  MEKAIGARGVTAGGS---FPVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLL
        ME  IGA GV  GG     P+N DIL NILGRLPAR FASA CVCKTWN +CNRIL RPKF+SAVSLNPS  V +  +L
Subjt:  MEKAIGARGVTAGGS---FPVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLL
A0A6J1JVL6 F-box/LRR-repeat protein At5g63520-like5.4e-1966.25Show/hide
Query:  MEKAIGARGVTAGGSF----PVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLL
        ME  IGA GV  GG      P+N DIL NI+GRLPAR FASAACVCKTWN +CNRIL RPKF+SAVSLNPS  V +  +L
Subjt:  MEKAIGARGVTAGGSF----PVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLL
A0A6J1KFR0 LOW QUALITY PROTEIN: F-box/LRR-repeat protein At5g63520-like6.8e-1477.36Show/hide
Query:  VNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDV
        +N DILHNI  RLPAR FA+AACV KTWN  CNRIL RPKFASAVSLNPS  V
Subjt:  VNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDV
SwissProt top hitse value%identityAlignment
Q9FMV0 F-box/LRR-repeat protein At5g635205.2e-1163.27Show/hide
Query:  VNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNP
        +N D+LHNIL RLPA+ FA A+CV + W+ +CNRILSRPK  SA S NP
Subjt:  VNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNP
Arabidopsis top hitse value%identityAlignment
AT5G63520.1 CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).3.7e-1263.27Show/hide
Query:  VNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNP
        +N D+LHNIL RLPA+ FA A+CV + W+ +CNRILSRPK  SA S NP
Subjt:  VNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGGCCATCGGAGCACGCGGAGTTACCGCCGGAGGATCTTTTCCGGTGAACGGCGACATTCTCCATAACATATTGGGAAGACTTCCGGCCCGGTGTTTCGCGTC
GGCGGCGTGCGTGTGTAAAACATGGAACTGTATCTGCAACCGTATCCTGTCTCGCCCTAAATTCGCCTCCGCCGTCTCCCTGAATCCCTCGTTCGACGTTATCCTTCTTC
CTCTCCTCTTTATTTCGCCAATTTTACTTAAT
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGGCCATCGGAGCACGCGGAGTTACCGCCGGAGGATCTTTTCCGGTGAACGGCGACATTCTCCATAACATATTGGGAAGACTTCCGGCCCGGTGTTTCGCGTC
GGCGGCGTGCGTGTGTAAAACATGGAACTGTATCTGCAACCGTATCCTGTCTCGCCCTAAATTCGCCTCCGCCGTCTCCCTGAATCCCTCGTTCGACGTTATCCTTCTTC
CTCTCCTCTTTATTTCGCCAATTTTACTTAAT
Protein sequenceShow/hide protein sequence
MEKAIGARGVTAGGSFPVNGDILHNILGRLPARCFASAACVCKTWNCICNRILSRPKFASAVSLNPSFDVILLPLLFISPILLN