; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS019918 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019918
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box/LRR-repeat protein At5g63520
Genome locationscaffold22:551380..551844
RNA-Seq ExpressionMS019918
SyntenyMS019918
Gene Ontology termsNA
InterPro domainsIPR019494 - FIST, C-domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019749.1 F-box/LRR-repeat protein [Cucurbita argyrosperma subsp. argyrosperma]3.9e-5471.24Show/hide
Query:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN
        GD++YFVV+GVGIRPGDSFLFYHSDSETA SSS    EDL+TL P        PKT AAA+SV    K+EVFGGLIFSCH RG++YFGRPNVN+S FS+N
Subjt:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN

Query:  FPGVPLAGIFCAGEIGRAFPRSIREVEE-EEDDSVRRCLHVYSTIYLVMSHVD
        FPGVP AG+FCAGEIGRA  RSI + EE +EDDSVRRCLHVYST+YLV+SH++
Subjt:  FPGVPLAGIFCAGEIGRAFPRSIREVEE-EEDDSVRRCLHVYSTIYLVMSHVD

XP_022137117.1 F-box/LRR-repeat protein At5g63520 [Momordica charantia]9.9e-8298.68Show/hide
Query:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN
        GDEEYFVVEGVGIRPGDSFLFYHSD+ETALSSSYNVLEDLSTLRPDPVGFQS PKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN
Subjt:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN

Query:  FPGVPLAGIFCAGEIGRAFPRSIREVEEEEDDSVRRCLHVYSTIYLVMSHVD
        FPGVPLAGIFCAGEIGRAFPRSIREVEEEEDDSVRRCLHVYSTIYLVMSHVD
Subjt:  FPGVPLAGIFCAGEIGRAFPRSIREVEEEEDDSVRRCLHVYSTIYLVMSHVD

XP_022924040.1 F-box/LRR-repeat protein At5g63520-like isoform X1 [Cucurbita moschata]1.8e-5471.24Show/hide
Query:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN
        GD++YFVV+GVGIRPGDSFLFYHSDSETA SSS    EDL+TL P        PKT AA +SV    K+EVFGGLIFSCH RG++YFGRPNVN+SPFS+N
Subjt:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN

Query:  FPGVPLAGIFCAGEIGRAFPRSIREVEE-EEDDSVRRCLHVYSTIYLVMSHVD
        FPGVP AG+FCAGEIGRA  RSI + EE +EDDSVRRCLHVYST+YLV+SH++
Subjt:  FPGVPLAGIFCAGEIGRAFPRSIREVEE-EEDDSVRRCLHVYSTIYLVMSHVD

XP_022924041.1 F-box/LRR-repeat protein At5g63520-like isoform X2 [Cucurbita moschata]1.8e-5471.24Show/hide
Query:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN
        GD++YFVV+GVGIRPGDSFLFYHSDSETA SSS    EDL+TL P        PKT AA +SV    K+EVFGGLIFSCH RG++YFGRPNVN+SPFS+N
Subjt:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN

Query:  FPGVPLAGIFCAGEIGRAFPRSIREVEE-EEDDSVRRCLHVYSTIYLVMSHVD
        FPGVP AG+FCAGEIGRA  RSI + EE +EDDSVRRCLHVYST+YLV+SH++
Subjt:  FPGVPLAGIFCAGEIGRAFPRSIREVEE-EEDDSVRRCLHVYSTIYLVMSHVD

XP_023519918.1 F-box/LRR-repeat protein At5g63520-like [Cucurbita pepo subsp. pepo]3.2e-5673.2Show/hide
Query:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN
        GD++YFVV+GVGIRPGDSFLFYHSDSETA SSS    EDL+TL P        PKT AAA+SV    K+EVFGGLIFSCH RG++YFGRPNVN+SPFS+N
Subjt:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN

Query:  FPGVPLAGIFCAGEIGRAFPRSIREVEE-EEDDSVRRCLHVYSTIYLVMSHVD
        FPGVP AG+FCAGEIGRA  RSIR+ EE +EDDSVRRCLHVYST+YLVMSH++
Subjt:  FPGVPLAGIFCAGEIGRAFPRSIREVEE-EEDDSVRRCLHVYSTIYLVMSHVD

TrEMBL top hitse value%identityAlignment
A0A6J1C7B9 F-box/LRR-repeat protein At5g635204.8e-8298.68Show/hide
Query:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN
        GDEEYFVVEGVGIRPGDSFLFYHSD+ETALSSSYNVLEDLSTLRPDPVGFQS PKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN
Subjt:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN

Query:  FPGVPLAGIFCAGEIGRAFPRSIREVEEEEDDSVRRCLHVYSTIYLVMSHVD
        FPGVPLAGIFCAGEIGRAFPRSIREVEEEEDDSVRRCLHVYSTIYLVMSHVD
Subjt:  FPGVPLAGIFCAGEIGRAFPRSIREVEEEEDDSVRRCLHVYSTIYLVMSHVD

A0A6J1E8F5 F-box/LRR-repeat protein At5g63520-like isoform X28.6e-5571.24Show/hide
Query:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN
        GD++YFVV+GVGIRPGDSFLFYHSDSETA SSS    EDL+TL P        PKT AA +SV    K+EVFGGLIFSCH RG++YFGRPNVN+SPFS+N
Subjt:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN

Query:  FPGVPLAGIFCAGEIGRAFPRSIREVEE-EEDDSVRRCLHVYSTIYLVMSHVD
        FPGVP AG+FCAGEIGRA  RSI + EE +EDDSVRRCLHVYST+YLV+SH++
Subjt:  FPGVPLAGIFCAGEIGRAFPRSIREVEE-EEDDSVRRCLHVYSTIYLVMSHVD

A0A6J1EDN6 F-box/LRR-repeat protein At5g63520-like isoform X18.6e-5571.24Show/hide
Query:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN
        GD++YFVV+GVGIRPGDSFLFYHSDSETA SSS    EDL+TL P        PKT AA +SV    K+EVFGGLIFSCH RG++YFGRPNVN+SPFS+N
Subjt:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN

Query:  FPGVPLAGIFCAGEIGRAFPRSIREVEE-EEDDSVRRCLHVYSTIYLVMSHVD
        FPGVP AG+FCAGEIGRA  RSI + EE +EDDSVRRCLHVYST+YLV+SH++
Subjt:  FPGVPLAGIFCAGEIGRAFPRSIREVEE-EEDDSVRRCLHVYSTIYLVMSHVD

A0A6J1GT60 F-box/LRR-repeat protein At5g63520-like6.8e-5257.65Show/hide
Query:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN
        GD+EYFVV+GVGIRPGDSFLFYHSDS+TA SSSY  LE L+TL+P P+       TRA ANS +  +KN+VFGGLIFSCHCRG +YFGRPNVNTSPF+ N
Subjt:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN

Query:  FPGVPLAGIFCAGEIGRAFPRSIR-----EVEEEED---------------------------------------DSVRRCLHVYSTIYLVMSHVD
        FPGVP AG+FCA EIGRAF RSIR     E EEE+D                                       DS+ RCLHVYST+YLVMSH D
Subjt:  FPGVPLAGIFCAGEIGRAFPRSIR-----EVEEEED---------------------------------------DSVRRCLHVYSTIYLVMSHVD

A0A6J1KFR0 LOW QUALITY PROTEIN: F-box/LRR-repeat protein At5g63520-like1.5e-5168.63Show/hide
Query:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN
        GD++YFVV+GVGIRPGDS LFYHSDSETA SSS    EDL+TL P        PKT A A+SV    K+ VFG LIFSCH RG++YFGRPNVN+SPFS+N
Subjt:  GDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVN

Query:  FPGVPLAGIFCAGEIGRAFPRSIREVEE-EEDDSVRRCLHVYSTIYLVMSHVD
        FPGVP +G+FCAGEIGRA  RSIR+ EE +EDDSVRR LHVYST+YLV+SH++
Subjt:  FPGVPLAGIFCAGEIGRAFPRSIREVEE-EEDDSVRRCLHVYSTIYLVMSHVD

SwissProt top hitse value%identityAlignment
P64730 Uncharacterized protein Mb0644c1.3e-0450Show/hide
Query:  GGLIFSCHCRGRSYFGRPNVNTSPFSVNFPGVPLAGIFCAGEIG
        GGL+F+C+ RGR  FG  + + S       G+PLAG F AGEIG
Subjt:  GGLIFSCHCRGRSYFGRPNVNTSPFSVNFPGVPLAGIFCAGEIG

P9WKR8 Uncharacterized protein MT08975.1e-0447.73Show/hide
Query:  GGLIFSCHCRGRSYFGRPNVNTSPFSVNFPGVPLAGIFCAGEIG
        G L+F+C+ RGR  FG  + + S       G+PLAG F AGEIG
Subjt:  GGLIFSCHCRGRSYFGRPNVNTSPFSVNFPGVPLAGIFCAGEIG

P9WKS6 Uncharacterized protein MT06561.3e-0450Show/hide
Query:  GGLIFSCHCRGRSYFGRPNVNTSPFSVNFPGVPLAGIFCAGEIG
        GGL+F+C+ RGR  FG  + + S       G+PLAG F AGEIG
Subjt:  GGLIFSCHCRGRSYFGRPNVNTSPFSVNFPGVPLAGIFCAGEIG

P9WKS7 Uncharacterized protein Rv0628c1.3e-0450Show/hide
Query:  GGLIFSCHCRGRSYFGRPNVNTSPFSVNFPGVPLAGIFCAGEIG
        GGL+F+C+ RGR  FG  + + S       G+PLAG F AGEIG
Subjt:  GGLIFSCHCRGRSYFGRPNVNTSPFSVNFPGVPLAGIFCAGEIG

Q9FMV0 F-box/LRR-repeat protein At5g635201.3e-2338.56Show/hide
Query:  LNRGDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPF
        +N  D++  +V+G GI+ GD F  Y  D + A ++  +V   L  L+  P                    K EV GG  F   CRG S+FG PN ++SPF
Subjt:  LNRGDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPF

Query:  SVNFPGVPLAGIFCAGEIGRAFPRSIREVEEEEDDSVRRCLHVYSTIYLVMSH
          NFP +P  GIFC GEIGR+    + E EE+++ S++R LHVYS++YL++S+
Subjt:  SVNFPGVPLAGIFCAGEIGRAFPRSIREVEEEEDDSVRRCLHVYSTIYLVMSH

Arabidopsis top hitse value%identityAlignment
AT5G63520.1 CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).9.1e-2538.56Show/hide
Query:  LNRGDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPF
        +N  D++  +V+G GI+ GD F  Y  D + A ++  +V   L  L+  P                    K EV GG  F   CRG S+FG PN ++SPF
Subjt:  LNRGDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPF

Query:  SVNFPGVPLAGIFCAGEIGRAFPRSIREVEEEEDDSVRRCLHVYSTIYLVMSH
          NFP +P  GIFC GEIGR+    + E EE+++ S++R LHVYS++YL++S+
Subjt:  SVNFPGVPLAGIFCAGEIGRAFPRSIREVEEEEDDSVRRCLHVYSTIYLVMSH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGAACAGAGGAGACGAGGAGTATTTTGTTGTGGAGGGCGTTGGAATCAGGCCAGGCGATTCCTTCTTATTCTACCATTCAGATTCGGAAACTGCTTTGTCTTCTTCTTA
CAATGTATTGGAAGATCTTTCAACTTTAAGGCCGGACCCAGTTGGCTTCCAAAGCCAACCCAAAACCAGAGCTGCCGCGAACTCTGTTTCTTTCGGCGAGAAGAATGAAG
TTTTTGGAGGCCTCATTTTCTCCTGCCATTGTCGAGGTCGGTCATATTTCGGACGTCCCAATGTGAATACGTCGCCGTTCAGTGTGAATTTCCCCGGAGTCCCATTGGCC
GGAATATTTTGCGCCGGAGAAATCGGCCGGGCCTTCCCAAGATCCATCAGAGAGGTGGAGGAGGAAGAAGATGACTCTGTTCGCCGTTGCTTGCATGTCTATAGCACAAT
TTATCTAGTGATGTCTCATGTTGAC
mRNA sequenceShow/hide mRNA sequence
TTGAACAGAGGAGACGAGGAGTATTTTGTTGTGGAGGGCGTTGGAATCAGGCCAGGCGATTCCTTCTTATTCTACCATTCAGATTCGGAAACTGCTTTGTCTTCTTCTTA
CAATGTATTGGAAGATCTTTCAACTTTAAGGCCGGACCCAGTTGGCTTCCAAAGCCAACCCAAAACCAGAGCTGCCGCGAACTCTGTTTCTTTCGGCGAGAAGAATGAAG
TTTTTGGAGGCCTCATTTTCTCCTGCCATTGTCGAGGTCGGTCATATTTCGGACGTCCCAATGTGAATACGTCGCCGTTCAGTGTGAATTTCCCCGGAGTCCCATTGGCC
GGAATATTTTGCGCCGGAGAAATCGGCCGGGCCTTCCCAAGATCCATCAGAGAGGTGGAGGAGGAAGAAGATGACTCTGTTCGCCGTTGCTTGCATGTCTATAGCACAAT
TTATCTAGTGATGTCTCATGTTGAC
Protein sequenceShow/hide protein sequence
LNRGDEEYFVVEGVGIRPGDSFLFYHSDSETALSSSYNVLEDLSTLRPDPVGFQSQPKTRAAANSVSFGEKNEVFGGLIFSCHCRGRSYFGRPNVNTSPFSVNFPGVPLA
GIFCAGEIGRAFPRSIREVEEEEDDSVRRCLHVYSTIYLVMSHVD