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MS019923 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019923
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein transport protein Sec61 subunit gamma
Genome locationscaffold22:567226..567540
RNA-Seq ExpressionMS019923
SyntenyMS019923
Gene Ontology termsGO:0006605 - protein targeting (biological process)
GO:0071806 - protein transmembrane transport (biological process)
GO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0008320 - protein transmembrane transporter activity (molecular function)
InterPro domainsIPR023391 - Protein translocase SecE domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4367686.1 hypothetical protein G4B88_001438 [Cannabis sativa]9.9e-1749.52Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGIFLSIVNVLRGSDSIEIIDFVFLFGLTYTIFWWCRIHQGCRSYRYRFRCDGICRVLCQANLHSDQQHH
        MDA+DSV DPLREF+KDS+RLVKRCHKPDRKG F S+                              I QGC  Y      DGI  +LC+ANLH  QQ+H
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGIFLSIVNVLRGSDSIEIIDFVFLFGLTYTIFWWCRIHQGCRSYRYRFRCDGICRVLCQANLHSDQQHH

Query:  RWIWL
        RWIWL
Subjt:  RWIWL

KAG6793332.1 hypothetical protein POTOM_002538 [Populus tomentosa]1.3e-1344.76Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGIFLSIVNVLRGSDSIEIIDFVFLFGLTYTIFWWCRIHQGCRSYRYRFRCDGICRVLCQANLHSDQQHH
        MDA+DSV DPLREF+KDSVRLVKRCHKPDRK                              +    R+H+G   Y  R R DGI R LC+ +++  QQHH
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGIFLSIVNVLRGSDSIEIIDFVFLFGLTYTIFWWCRIHQGCRSYRYRFRCDGICRVLCQANLHSDQQHH

Query:  RWIWL
         WI L
Subjt:  RWIWL

RWW25336.1 hypothetical protein GW17_00010325 [Ensete ventricosum]2.9e-1650.44Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGIFLSI-VNVLRGSDSIEIID------FVFLFGLTYTIFWW------CRIHQGCRSYRYRFRCDGICRV
        MDA+DSVVDPLREFAKDSVRLVKRCHKPDRKG  L +   ++   DS++++D       +F+F      F +      CR+ +G   +  R R DGI R 
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGIFLSI-VNVLRGSDSIEIID------FVFLFGLTYTIFWW------CRIHQGCRSYRYRFRCDGICRV

Query:  LCQANLHSDQQHH
        L QA+L+SDQQHH
Subjt:  LCQANLHSDQQHH

RWW86562.1 hypothetical protein BHE74_00004670 [Ensete ventricosum]6.4e-1650.44Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGIFLSI-VNVLRGSDSIEIID------FVFLFGLTYTIFWW------CRIHQGCRSYRYRFRCDGICRV
        MDA+DSVVDPLREFAKDSVRLVKRCHKPDRKG  L +   ++   DS++++D       +F+F      F        CR+ +G   +  R R DGI R 
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGIFLSI-VNVLRGSDSIEIID------FVFLFGLTYTIFWW------CRIHQGCRSYRYRFRCDGICRV

Query:  LCQANLHSDQQHH
        L QA+L+SDQQHH
Subjt:  LCQANLHSDQQHH

VDD40317.1 unnamed protein product [Brassica oleracea]2.2e-1642.42Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGI---FLSIVNVLRGSDSIE-------IIDFVFL-----------------FGLTYTIFWWCRIHQGCR
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKGI    L     L   D+ E       +I +++L                   + + + W+CRIH+   
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGI---FLSIVNVLRGSDSIE-------IIDFVFL-----------------FGLTYTIFWWCRIHQGCR

Query:  SYRYRFRCDGICRVLCQANLHSDQQHHRWIWL
         Y  RF  +G+  +LC+A+L+S QQHHR  +L
Subjt:  SYRYRFRCDGICRVLCQANLHSDQQHHRWIWL

TrEMBL top hitse value%identityAlignment
A0A0A0LUE9 Uncharacterized protein5.8e-3169.52Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGIFLSIVNVLRGSDSIEIIDFVFLFGLTYTIFWWCRIHQGCRSYRYRFRCDGICRVLCQANLHSDQQHH
        MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKG+FL+          I++I F              RIHQGCRSYRYR RCDGICRVLCQANLHSDQQ+H
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGIFLSIVNVLRGSDSIEIIDFVFLFGLTYTIFWWCRIHQGCRSYRYRFRCDGICRVLCQANLHSDQQHH

Query:  RWIWL
        R IWL
Subjt:  RWIWL

A0A0D3DFY5 Uncharacterized protein4.8e-1742.42Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGI---FLSIVNVLRGSDSIE-------IIDFVFL-----------------FGLTYTIFWWCRIHQGCR
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKGI    L     L   D+ E       +I +++L                   + + + W+CRIH+   
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGI---FLSIVNVLRGSDSIE-------IIDFVFL-----------------FGLTYTIFWWCRIHQGCR

Query:  SYRYRFRCDGICRVLCQANLHSDQQHHRWIWL
         Y  RF  +G+  +LC+A+L+S+QQHHR  +L
Subjt:  SYRYRFRCDGICRVLCQANLHSDQQHHRWIWL

A0A3P6E840 Uncharacterized protein1.1e-1642.42Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGI---FLSIVNVLRGSDSIE-------IIDFVFL-----------------FGLTYTIFWWCRIHQGCR
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKGI    L     L   D+ E       +I +++L                   + + + W+CRIH+   
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGI---FLSIVNVLRGSDSIE-------IIDFVFL-----------------FGLTYTIFWWCRIHQGCR

Query:  SYRYRFRCDGICRVLCQANLHSDQQHHRWIWL
         Y  RF  +G+  +LC+A+L+S QQHHR  +L
Subjt:  SYRYRFRCDGICRVLCQANLHSDQQHHRWIWL

A0A444FRX1 Uncharacterized protein1.4e-1650.44Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGIFLSI-VNVLRGSDSIEIID------FVFLFGLTYTIFWW------CRIHQGCRSYRYRFRCDGICRV
        MDA+DSVVDPLREFAKDSVRLVKRCHKPDRKG  L +   ++   DS++++D       +F+F      F +      CR+ +G   +  R R DGI R 
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGIFLSI-VNVLRGSDSIEIID------FVFLFGLTYTIFWW------CRIHQGCRSYRYRFRCDGICRV

Query:  LCQANLHSDQQHH
        L QA+L+SDQQHH
Subjt:  LCQANLHSDQQHH

A0A7J6FAH1 Uncharacterized protein4.8e-1749.52Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGIFLSIVNVLRGSDSIEIIDFVFLFGLTYTIFWWCRIHQGCRSYRYRFRCDGICRVLCQANLHSDQQHH
        MDA+DSV DPLREF+KDS+RLVKRCHKPDRKG F S+                              I QGC  Y      DGI  +LC+ANLH  QQ+H
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGIFLSIVNVLRGSDSIEIIDFVFLFGLTYTIFWWCRIHQGCRSYRYRFRCDGICRVLCQANLHSDQQHH

Query:  RWIWL
        RWIWL
Subjt:  RWIWL

SwissProt top hitse value%identityAlignment
P0DI74 Protein transport protein Sec61 subunit gamma-17.1e-1090.32Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRK
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK

P0DI75 Protein transport protein Sec61 subunit gamma-27.1e-1090.32Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRK
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK

P38385 Protein transport protein Sec61 subunit gamma1.9e-10100Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK
        MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK

Q7Z1B8 Protein transport protein Sec61 subunit gamma6.9e-0567.74Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK
        MD V   ++P R+FAKDS+RLVKRC KPDRK
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK

Q9SMP2 Protein transport protein Sec61 subunit gamma-38.7e-0877.42Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK
        M+A+DS +DPLR+FAK SVRLV+RCHKPDRK
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK

Arabidopsis top hitse value%identityAlignment
AT3G48570.1 secE/sec61-gamma protein transport protein6.2e-0977.42Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK
        M+A+DS +DPLR+FAK SVRLV+RCHKPDRK
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK

AT4G24920.1 secE/sec61-gamma protein transport protein5.1e-1190.32Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRK
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK

AT5G50460.1 secE/sec61-gamma protein transport protein5.1e-1190.32Show/hide
Query:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK
        MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRK
Subjt:  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCCGTAGATTCAGTGGTCGATCCCCTTAGAGAATTCGCCAAGGATAGCGTTCGTCTCGTTAAGAGGTGTCACAAGCCTGATCGCAAGGGTATTTTTCTTTCTAT
TGTCAATGTGTTGCGTGGATCTGATTCAATCGAGATCATAGATTTTGTTTTCCTTTTCGGTTTGACTTATACTATATTCTGGTGGTGCAGAATTCACCAAGGTTGCCGTT
CGTACCGCTATCGGTTTCGTTGTGATGGGATTTGTAGGGTTCTTTGTCAAGCTAATCTTCATTCCGATCAACAACATCATCGTTGGATCTGGTTA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCCGTAGATTCAGTGGTCGATCCCCTTAGAGAATTCGCCAAGGATAGCGTTCGTCTCGTTAAGAGGTGTCACAAGCCTGATCGCAAGGGTATTTTTCTTTCTAT
TGTCAATGTGTTGCGTGGATCTGATTCAATCGAGATCATAGATTTTGTTTTCCTTTTCGGTTTGACTTATACTATATTCTGGTGGTGCAGAATTCACCAAGGTTGCCGTT
CGTACCGCTATCGGTTTCGTTGTGATGGGATTTGTAGGGTTCTTTGTCAAGCTAATCTTCATTCCGATCAACAACATCATCGTTGGATCTGGTTA
Protein sequenceShow/hide protein sequence
MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGIFLSIVNVLRGSDSIEIIDFVFLFGLTYTIFWWCRIHQGCRSYRYRFRCDGICRVLCQANLHSDQQHHRWIWL