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MS019962 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019962
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionStructural constituent of ribosome
Genome locationscaffold22:814934..815128
RNA-Seq ExpressionMS019962
SyntenyMS019962
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055302.1 Ribosomal_S21 domain-containing protein [Cucumis melo var. makuwa]2.0e-0761.54Show/hide
Query:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI
        MA AATSS+T FFSFLSISKS  I HNSVS+NFQ LPKS    L A+  +V SSS +   V  RI
Subjt:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI

TYJ99226.1 putative Ribosomal protein S21 family protein [Cucumis melo var. makuwa]2.0e-0761.54Show/hide
Query:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI
        MA AATSS+T FFSFLSISKS  I HNSVS+NFQ LPKS    L A+  +V SSS +   V  RI
Subjt:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI

XP_004152510.2 30S ribosomal protein S21, chloroplastic [Cucumis sativus]2.2e-0660Show/hide
Query:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI
        MA AATSS+T FFSFLSISKS  I HNSVS+N Q LP S    L A+  +V SSS +   V LRI
Subjt:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI

XP_008439325.1 PREDICTED: uncharacterized protein LOC103484145 [Cucumis melo]2.0e-0761.54Show/hide
Query:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI
        MA AATSS+T FFSFLSISKS  I HNSVS+NFQ LPKS    L A+  +V SSS +   V  RI
Subjt:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI

XP_038894121.1 30S ribosomal protein S21, chloroplastic-like [Benincasa hispida]6.1e-0969.35Show/hide
Query:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVF
        MA AATSSLTKFFS LSISKS  I HNSVS+N Q LPKS PA L AT  SVT SS +   VF
Subjt:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVF

TrEMBL top hitse value%identityAlignment
A0A0A0LWJ6 Uncharacterized protein1.1e-0660Show/hide
Query:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI
        MA AATSS+T FFSFLSISKS  I HNSVS+N Q LP S    L A+  +V SSS +   V LRI
Subjt:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI

A0A1S3AZ70 uncharacterized protein LOC1034841459.6e-0861.54Show/hide
Query:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI
        MA AATSS+T FFSFLSISKS  I HNSVS+NFQ LPKS    L A+  +V SSS +   V  RI
Subjt:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI

A0A5A7UHJ6 Ribosomal_S21 domain-containing protein9.6e-0861.54Show/hide
Query:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI
        MA AATSS+T FFSFLSISKS  I HNSVS+NFQ LPKS    L A+  +V SSS +   V  RI
Subjt:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI

A0A5D3BJF5 Putative Ribosomal protein S21 family protein9.6e-0861.54Show/hide
Query:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI
        MA AATSS+T FFSFLSISKS  I HNSVS+NFQ LPKS    L A+  +V SSS +   V  RI
Subjt:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI

E5GBW8 Structural constituent of ribosome9.6e-0861.54Show/hide
Query:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI
        MA AATSS+T FFSFLSISKS  I HNSVS+NFQ LPKS    L A+  +V SSS +   V  RI
Subjt:  MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGTCGCTGCAACTTCATCTCTCACGAAGTTCTTCTCCTTCCTCTCCATCTCGAAATCATTATCAATAATTCATAACTCCGTCTCTTTAAACTTTCAGCATCTTCC
GAAGTCTGGACCAGCTCCGTTGATTGCCACCATGGACTCTGTTACGTCTTCTTCCCCGAAAGAAACTGCCGTCTTCTTACGCATA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGTCGCTGCAACTTCATCTCTCACGAAGTTCTTCTCCTTCCTCTCCATCTCGAAATCATTATCAATAATTCATAACTCCGTCTCTTTAAACTTTCAGCATCTTCC
GAAGTCTGGACCAGCTCCGTTGATTGCCACCATGGACTCTGTTACGTCTTCTTCCCCGAAAGAAACTGCCGTCTTCTTACGCATA
Protein sequenceShow/hide protein sequence
MAVAATSSLTKFFSFLSISKSLSIIHNSVSLNFQHLPKSGPAPLIATMDSVTSSSPKETAVFLRI