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MS019968 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019968
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRPM1-interacting protein 4-like
Genome locationscaffold22:841804..842110
RNA-Seq ExpressionMS019968
SyntenyMS019968
Gene Ontology termsNA
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439256.1 PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo]2.1e-2978.95Show/hide
Query:  LLQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG
        +  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG AA+ V  +RNE ++NNE++PQY PPKKRWFCCG
Subjt:  LLQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG

XP_008439265.1 PREDICTED: RPM1-interacting protein 4 isoform X2 [Cucumis melo]8.2e-2978.67Show/hide
Query:  LQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG
        +  DRGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG AA+ V  +RNE ++NNE++PQY PPKKRWFCCG
Subjt:  LQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG

XP_022137179.1 uncharacterized protein LOC111008714 isoform X1 [Momordica charantia]1.4e-3698.65Show/hide
Query:  QQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG
        +QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG
Subjt:  QQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG

XP_022137180.1 uncharacterized protein LOC111008714 isoform X2 [Momordica charantia]5.3e-3698.63Show/hide
Query:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG
        +DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG
Subjt:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG

XP_022954832.1 RPM1-interacting protein 4-like [Cucurbita moschata]1.4e-2883.56Show/hide
Query:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG
        QD+GRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTG+ A+ VS Q NE  YNNE+FPQ  PPKKRWFCCG
Subjt:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG

TrEMBL top hitse value%identityAlignment
A0A1S3AYE6 RPM1-interacting protein 4 isoform X24.0e-2978.67Show/hide
Query:  LQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG
        +  DRGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG AA+ V  +RNE ++NNE++PQY PPKKRWFCCG
Subjt:  LQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG

A0A1S3AZ04 RPM1-interacting protein 4 isoform X11.0e-2978.95Show/hide
Query:  LLQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG
        +  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKAR+EKKTTG AA+ V  +RNE ++NNE++PQY PPKKRWFCCG
Subjt:  LLQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG

A0A6J1C5Z3 uncharacterized protein LOC111008714 isoform X22.6e-3698.63Show/hide
Query:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG
        +DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG
Subjt:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG

A0A6J1C6I4 uncharacterized protein LOC111008714 isoform X16.7e-3798.65Show/hide
Query:  QQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG
        +QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG
Subjt:  QQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG

A0A6J1GRZ4 RPM1-interacting protein 4-like6.7e-2983.56Show/hide
Query:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG
        QD+GRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTG+ A+ VS Q NE  YNNE+FPQ  PPKKRWFCCG
Subjt:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG

SwissProt top hitse value%identityAlignment
O22633 Protein NOI46.3e-1659.15Show/hide
Query:  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCC
        D+GRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT G   S    + +E    +       P  K+W CC
Subjt:  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCC

Q8GYN5 RPM1-interacting protein 43.5e-0645.28Show/hide
Query:  LPKFGEWDVNNPASAEGFTVIFNKARDEKKT-TGTAASTVSPQRNESIYNNET
        +PKFG+WD NNP+SA+G+T IFNK R+E+ +    + S+ +P    S   N T
Subjt:  LPKFGEWDVNNPASAEGFTVIFNKARDEKKT-TGTAASTVSPQRNESIYNNET

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein9.0e-1860.56Show/hide
Query:  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCC
        D+GRPLPKFGEWDVN+P+SAEGFTVIFNKAR+EKK  G    + SP ++E  Y N+       P K+WFCC
Subjt:  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCC

AT3G48450.1 RPM1-interacting protein 4 (RIN4) family protein2.9e-1655.42Show/hide
Query:  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAA----STVSPQRNES--IYNNETFPQYHP-------PKKRWFC
        +R RPLPKFGEWD  NP SAEGFTVIFNKARD+KKT  TA     S VSP RNE     NN     +H         KK+W C
Subjt:  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAA----STVSPQRNES--IYNNETFPQYHP-------PKKRWFC

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein1.1e-1583.72Show/hide
Query:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAAS
        +D+GRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT G   S
Subjt:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAAS

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein3.4e-1758.33Show/hide
Query:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCC
        +D+GRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT G   S    + +E    +       P  K+W CC
Subjt:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCC

AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein1.1e-1858.97Show/hide
Query:  LQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAA----STVSPQRNE-SIYNNETFPQYHPPKKRWFC
        + +++G+PLPKFGEWDVNNPASAEGFTVIF+KA DEKKT   +     S VSPQRN+ S  NN    Q    K +WFC
Subjt:  LQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAA----STVSPQRNE-SIYNNETFPQYHPPKKRWFC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGTTGCAGCAGGACAGGGGTCGTCCACTGCCAAAGTTTGGTGAATGGGATGTAAATAATCCTGCATCTGCGGAAGGATTTACAGTCATATTTAACAAGGCTAGAGATGA
GAAGAAGACCACTGGAACTGCTGCCAGCACGGTTTCACCTCAGAGAAATGAGTCTATCTATAACAATGAAACTTTCCCTCAATATCATCCACCGAAGAAGAGGTGGTTTT
GCTGTGGT
mRNA sequenceShow/hide mRNA sequence
TTGTTGCAGCAGGACAGGGGTCGTCCACTGCCAAAGTTTGGTGAATGGGATGTAAATAATCCTGCATCTGCGGAAGGATTTACAGTCATATTTAACAAGGCTAGAGATGA
GAAGAAGACCACTGGAACTGCTGCCAGCACGGTTTCACCTCAGAGAAATGAGTCTATCTATAACAATGAAACTTTCCCTCAATATCATCCACCGAAGAAGAGGTGGTTTT
GCTGTGGT
Protein sequenceShow/hide protein sequence
LLQQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTTGTAASTVSPQRNESIYNNETFPQYHPPKKRWFCCG