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MS019980 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019980
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPectinesterase
Genome locationscaffold22:935703..935902
RNA-Seq ExpressionMS019980
SyntenyMS019980
Gene Ontology termsGO:0042545 - cell wall modification (biological process)
GO:0016020 - membrane (cellular component)
GO:0030599 - pectinesterase activity (molecular function)
GO:0046910 - pectinesterase inhibitor activity (molecular function)
InterPro domainsIPR000070 - Pectinesterase, catalytic
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055286.1 putative pectinesterase/pectinesterase inhibitor 47 [Cucumis melo var. makuwa]1.1e-1357.81Show/hide
Query:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA---FTIQSFINGSNWLSETGVVVR
        EW  VPV+ LFYGEFNN    ADVSKRVNW G+H++D+ +   FT+ +FI+GS WL+ETG+  R
Subjt:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA---FTIQSFINGSNWLSETGVVVR

KAA0055287.1 putative pectinesterase/pectinesterase inhibitor 41 [Cucumis melo var. makuwa]1.1e-1357.81Show/hide
Query:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDE---HAFTIQSFINGSNWLSETGVVVR
        EW  VP + LFYGEFNNR   ADVSKRV+W+GFH++++   + FTI +F+NGS WL ETG+  R
Subjt:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDE---HAFTIQSFINGSNWLSETGVVVR

KAG6572149.1 putative pectinesterase/pectinesterase inhibitor 41, partial [Cucurbita argyrosperma subsp. sororia]1.3e-1456.72Show/hide
Query:  WASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA---FTIQSFINGSNWLSETGVVVRSKGY
        W+ VPV+ LFYGEFNNR + AD + RVNW GFHVID      FT+++FING++WL ETGV+ ++  Y
Subjt:  WASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA---FTIQSFINGSNWLSETGVVVRSKGY

TYJ99209.1 pectinesterase 2-like [Cucumis melo var. makuwa]1.1e-1357.81Show/hide
Query:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA---FTIQSFINGSNWLSETGVVVR
        EW  VPV+ LFYGEFNN    ADVSKRVNW G+H++D+ +   FT+ +FI+GS WL+ETG+  R
Subjt:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA---FTIQSFINGSNWLSETGVVVR

XP_008465578.1 PREDICTED: pectinesterase 2-like, partial [Cucumis melo]1.1e-1357.81Show/hide
Query:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA---FTIQSFINGSNWLSETGVVVR
        EW  VPV+ LFYGEFNN    ADVSKRVNW G+H++D+ +   FT+ +FI+GS WL+ETG+  R
Subjt:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA---FTIQSFINGSNWLSETGVVVR

TrEMBL top hitse value%identityAlignment
A0A1S3CP42 Pectinesterase5.2e-1457.81Show/hide
Query:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA---FTIQSFINGSNWLSETGVVVR
        EW  VPV+ LFYGEFNN    ADVSKRVNW G+H++D+ +   FT+ +FI+GS WL+ETG+  R
Subjt:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA---FTIQSFINGSNWLSETGVVVR

A0A5A7ULX7 Pectinesterase5.2e-1457.81Show/hide
Query:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA---FTIQSFINGSNWLSETGVVVR
        EW  VPV+ LFYGEFNN    ADVSKRVNW G+H++D+ +   FT+ +FI+GS WL+ETG+  R
Subjt:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA---FTIQSFINGSNWLSETGVVVR

A0A5A7UNS3 Pectinesterase6.8e-1456.25Show/hide
Query:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA---FTIQSFINGSNWLSETGVVVR
        EW  VP+  LFYGEFNN    ADVSKRVNW G+H++++ +   FT+ +FINGS WL ETG+  R
Subjt:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA---FTIQSFINGSNWLSETGVVVR

A0A5D3BHF7 Pectinesterase5.2e-1457.81Show/hide
Query:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDE---HAFTIQSFINGSNWLSETGVVVR
        EW  VP + LFYGEFNNR   ADVSKRV+W+GFH++++   + FTI +F+NGS WL ETG+  R
Subjt:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDE---HAFTIQSFINGSNWLSETGVVVR

A0A5D3BJU4 Pectinesterase5.2e-1457.81Show/hide
Query:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA---FTIQSFINGSNWLSETGVVVR
        EW  VPV+ LFYGEFNN    ADVSKRVNW G+H++D+ +   FT+ +FI+GS WL+ETG+  R
Subjt:  EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA---FTIQSFINGSNWLSETGVVVR

SwissProt top hitse value%identityAlignment
O49298 Probable pectinesterase/pectinesterase inhibitor 65.4e-0840.98Show/hide
Query:  SVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVI----DEHAFTIQSFINGSNWLSETGVVV
        S  +  L+YGE+ N    A VS RV W G+HVI    +   FT+++F++G+ W++ TGV V
Subjt:  SVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVI----DEHAFTIQSFINGSNWLSETGVVV

P14280 Pectinesterase 11.2e-0744.44Show/hide
Query:  EW-ASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA----FTIQSFINGSNWLSETGV
        EW     +  L+YGEF N    A  SKRV W G+HVI + A    FT+   I G +WL  TGV
Subjt:  EW-ASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHA----FTIQSFINGSNWLSETGV

Q84R10 Probable pectinesterase/pectinesterase inhibitor 364.1e-0846.03Show/hide
Query:  EWA-SVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVI--DEHA--FTIQSFINGSNWLSETGV
        EW+ S  +  L+YGEF N    A   +RVNW GFHV+  +E A  FT+  FI G +W+  TGV
Subjt:  EWA-SVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVI--DEHA--FTIQSFINGSNWLSETGV

Q9FK05 Probable pectinesterase/pectinesterase inhibitor 611.4e-0841.27Show/hide
Query:  EW-ASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVI----DEHAFTIQSFINGSNWLSETGV
        EW     +D L+YGE+ N+ + + + +RV W G+HVI    +   FT+  FI+GS+WL  TGV
Subjt:  EW-ASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVI----DEHAFTIQSFINGSNWLSETGV

Q9SMY7 Probable pectinesterase/pectinesterase inhibitor 447.1e-0844.44Show/hide
Query:  EW-ASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDE----HAFTIQSFINGSNWLSETGV
        EW A   +D LFYGEF N    + +S RV W G+HV +     + FT+  FI G+ WL  TGV
Subjt:  EW-ASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDE----HAFTIQSFINGSNWLSETGV

Arabidopsis top hitse value%identityAlignment
AT1G23200.1 Plant invertase/pectin methylesterase inhibitor superfamily3.8e-0940.98Show/hide
Query:  SVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVI----DEHAFTIQSFINGSNWLSETGVVV
        S  +  L+YGE+ N    A VS RV W G+HVI    +   FT+++F++G+ W++ TGV V
Subjt:  SVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVI----DEHAFTIQSFINGSNWLSETGVVV

AT3G05620.1 Plant invertase/pectin methylesterase inhibitor superfamily8.6e-0943.55Show/hide
Query:  EW-ASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEH---AFTIQSFINGSNWLSETGV
        EW  +  +D L+YGE+NN       S RV W G+H++D+    +FT+ SFI+G  WL  TGV
Subjt:  EW-ASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEH---AFTIQSFINGSNWLSETGV

AT3G60730.1 Plant invertase/pectin methylesterase inhibitor superfamily2.9e-0946.03Show/hide
Query:  EWA-SVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVI--DEHA--FTIQSFINGSNWLSETGV
        EW+ S  +  L+YGEF N    A   +RVNW GFHV+  +E A  FT+  FI G +W+  TGV
Subjt:  EWA-SVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVI--DEHA--FTIQSFINGSNWLSETGV

AT4G33220.1 pectin methylesterase 445.0e-0944.44Show/hide
Query:  EW-ASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDE----HAFTIQSFINGSNWLSETGV
        EW A   +D LFYGEF N    + +S RV W G+HV +     + FT+  FI G+ WL  TGV
Subjt:  EW-ASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDE----HAFTIQSFINGSNWLSETGV

AT5G53370.1 pectin methylesterase PCR fragment F1.0e-0941.27Show/hide
Query:  EW-ASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVI----DEHAFTIQSFINGSNWLSETGV
        EW     +D L+YGE+ N+ + + + +RV W G+HVI    +   FT+  FI+GS+WL  TGV
Subjt:  EW-ASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVI----DEHAFTIQSFINGSNWLSETGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGTGGGCGAGTGTACCGGTAGACCGCTTGTTTTATGGAGAGTTCAACAACAGAGATATGAGTGCTGACGTGTCCAAAAGAGTAAATTGGATGGGATTTCATGTAATTGA
TGAACACGCATTTACCATACAAAGTTTCATTAATGGATCTAATTGGTTGTCAGAAACTGGTGTAGTTGTTAGATCTAAAGGGTAT
mRNA sequenceShow/hide mRNA sequence
GAGTGGGCGAGTGTACCGGTAGACCGCTTGTTTTATGGAGAGTTCAACAACAGAGATATGAGTGCTGACGTGTCCAAAAGAGTAAATTGGATGGGATTTCATGTAATTGA
TGAACACGCATTTACCATACAAAGTTTCATTAATGGATCTAATTGGTTGTCAGAAACTGGTGTAGTTGTTAGATCTAAAGGGTAT
Protein sequenceShow/hide protein sequence
EWASVPVDRLFYGEFNNRDMSADVSKRVNWMGFHVIDEHAFTIQSFINGSNWLSETGVVVRSKGY