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MS019993 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019993
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMediator of RNA polymerase II transcription subunit 13, putative
Genome locationscaffold22:1058474..1058881
RNA-Seq ExpressionMS019993
SyntenyMS019993
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584197.1 hypothetical protein SDJN03_20129, partial [Cucurbita argyrosperma subsp. sororia]1.3e-4577.21Show/hide
Query:  MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDV
        MK KP VED+  HLEILKAVAQAW SHTG+SKPA+EFDAHRRNCR  PSRFKLEAIR+RSS G   G  RWDF QSLWDSYEIV VSKKLE GLVLDGD 
Subjt:  MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDV

Query:  FHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN
        F E DGGGR   QRK  ES NSLRNLFNR +SRRFN
Subjt:  FHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN

XP_011651756.1 uncharacterized protein LOC105434938 [Cucumis sativus]1.3e-4575.71Show/hide
Query:  MKKKP---EVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTR-SSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVL
        MKKKP   ++ DD RHLEILKAVAQAWHSHTG+SKPA+EFDAHRRN R  PSRFK+EAIR+R S+  DR    RWDF+QSLWDSYEIVTVSKKLEAGLVL
Subjt:  MKKKP---EVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTR-SSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVL

Query:  DGDVFHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN
        DGD F E + GG GR QRK  ES NSLRNLFNR SSRRFN
Subjt:  DGDVFHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN

XP_022137185.1 uncharacterized protein LOC111008716 [Momordica charantia]2.4e-71100Show/hide
Query:  MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDV
        MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDV
Subjt:  MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDV

Query:  FHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN
        FHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN
Subjt:  FHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN

XP_022923731.1 uncharacterized protein LOC111431350 [Cucurbita moschata]1.3e-4577.21Show/hide
Query:  MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDV
        MK KP VED+  HLEILKAVAQAW SHTG+SKPA+EFDAHRRNCR  PSRFKLEAIR+RSS G   G  RWDF QSLWDSYEIV VSKKLE GLVLDGD 
Subjt:  MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDV

Query:  FHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN
        F E DGGGR   QRK  ES NSLRNLFNR +SRRFN
Subjt:  FHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN

XP_038894267.1 uncharacterized protein LOC120082919 [Benincasa hispida]2.3e-5081.88Show/hide
Query:  MKKKPEV--EDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDG
        MKKKPE+  +DDHRHLEILKAVAQAWHSHTGSSKPA+EFDAHRRN R TPSRFKLEAIRTRSS  DR    RWDF QSLWDSYEIVTVSKKLEAGLVLD 
Subjt:  MKKKPEV--EDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDG

Query:  DVFHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN
        D F E DGGG GR QRK  ES NSLRNLF+R SSRRFN
Subjt:  DVFHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN

TrEMBL top hitse value%identityAlignment
A0A0A0LTM3 Uncharacterized protein6.4e-4675.71Show/hide
Query:  MKKKP---EVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTR-SSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVL
        MKKKP   ++ DD RHLEILKAVAQAWHSHTG+SKPA+EFDAHRRN R  PSRFK+EAIR+R S+  DR    RWDF+QSLWDSYEIVTVSKKLEAGLVL
Subjt:  MKKKP---EVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTR-SSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVL

Query:  DGDVFHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN
        DGD F E + GG GR QRK  ES NSLRNLFNR SSRRFN
Subjt:  DGDVFHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN

A0A1S3AX17 uncharacterized protein LOC1034838292.4e-4574.1Show/hide
Query:  MKKKP---EVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLD
        MKKKP   ++ D  RHLEILKAVAQAWH+HTG+SKPA+EFDAHRRN R TPSRFKLEAIR+R+++       RWDF+QSLWDSYEIVTVSKKLEAGLVLD
Subjt:  MKKKP---EVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLD

Query:  GDVFHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN
        GD F E + GG GR QRK  ES NSLRNLFNR SSRRFN
Subjt:  GDVFHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN

A0A5A7UNW1 Uncharacterized protein2.4e-4574.1Show/hide
Query:  MKKKP---EVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLD
        MKKKP   ++ D  RHLEILKAVAQAWH+HTG+SKPA+EFDAHRRN R TPSRFKLEAIR+R+++       RWDF+QSLWDSYEIVTVSKKLEAGLVLD
Subjt:  MKKKP---EVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLD

Query:  GDVFHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN
        GD F E + GG GR QRK  ES NSLRNLFNR SSRRFN
Subjt:  GDVFHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN

A0A6J1C5Z6 uncharacterized protein LOC1110087161.2e-71100Show/hide
Query:  MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDV
        MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDV
Subjt:  MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDV

Query:  FHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN
        FHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN
Subjt:  FHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN

A0A6J1E7J5 uncharacterized protein LOC1114313506.4e-4677.21Show/hide
Query:  MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDV
        MK KP VED+  HLEILKAVAQAW SHTG+SKPA+EFDAHRRNCR  PSRFKLEAIR+RSS G   G  RWDF QSLWDSYEIV VSKKLE GLVLDGD 
Subjt:  MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDV

Query:  FHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN
        F E DGGGR   QRK  ES NSLRNLFNR +SRRFN
Subjt:  FHEYDGGGRGRVQRKHTESNNSLRNLFNRVSSRRFN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24700.1 unknown protein2.2e-2244.9Show/hide
Query:  MKKKPEVEDDH--------RHLEILKAVAQAWHSHTGSSK-PANEFDAHRRNC--RGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKK
        M+KK E +D++        + LE++KA AQAW SH+ +SK    EFDA R++   +G  SRFK EA+    SA        W+F QSLWD YEI++VSKK
Subjt:  MKKKPEVEDDH--------RHLEILKAVAQAWHSHTGSSK-PANEFDAHRRNC--RGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKK

Query:  LEAGLVLDGDVFHEYDGGGRGRVQRKHT-ESNNSLRNLFNRVSSRRF
        LE  L L+   F   D  G  ++++K T +S NSLR+LF R SS+RF
Subjt:  LEAGLVLDGDVFHEYDGGGRGRVQRKHT-ESNNSLRNLFNRVSSRRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAAACCAGAGGTTGAAGACGACCACCGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCCTGGCACAGCCACACCGGCAGTTCAAAGCCCGCTAATGAATT
CGACGCCCACCGCCGGAATTGCAGAGGCACCCCCTCCCGCTTCAAGCTGGAGGCGATAAGAACCAGGTCCTCCGCCGGCGACCGGAGCGGCGGCCCGAGATGGGACTTCA
GCCAATCGCTGTGGGACTCGTATGAGATTGTGACGGTGTCGAAGAAGCTGGAGGCGGGGCTGGTTCTCGACGGCGACGTGTTTCATGAATACGACGGCGGCGGGCGAGGG
AGAGTCCAGCGGAAACACACAGAGAGTAATAATAGTCTCAGAAACTTGTTCAACAGGGTTTCTTCGAGGAGGTTCAAC
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGAAACCAGAGGTTGAAGACGACCACCGTCATCTCGAAATCCTCAAGGCGGTGGCGCAGGCCTGGCACAGCCACACCGGCAGTTCAAAGCCCGCTAATGAATT
CGACGCCCACCGCCGGAATTGCAGAGGCACCCCCTCCCGCTTCAAGCTGGAGGCGATAAGAACCAGGTCCTCCGCCGGCGACCGGAGCGGCGGCCCGAGATGGGACTTCA
GCCAATCGCTGTGGGACTCGTATGAGATTGTGACGGTGTCGAAGAAGCTGGAGGCGGGGCTGGTTCTCGACGGCGACGTGTTTCATGAATACGACGGCGGCGGGCGAGGG
AGAGTCCAGCGGAAACACACAGAGAGTAATAATAGTCTCAGAAACTTGTTCAACAGGGTTTCTTCGAGGAGGTTCAAC
Protein sequenceShow/hide protein sequence
MKKKPEVEDDHRHLEILKAVAQAWHSHTGSSKPANEFDAHRRNCRGTPSRFKLEAIRTRSSAGDRSGGPRWDFSQSLWDSYEIVTVSKKLEAGLVLDGDVFHEYDGGGRG
RVQRKHTESNNSLRNLFNRVSSRRFN