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MS019996 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS019996
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTranscription termination factor 4
Genome locationscaffold22:1070940..1072761
RNA-Seq ExpressionMS019996
SyntenyMS019996
Gene Ontology termsGO:0090266 - regulation of mitotic cell cycle spindle assembly checkpoint (biological process)
GO:0005680 - anaphase-promoting complex (cellular component)
InterPro domainsIPR026182 - Anaphase-promoting complex subunit 15


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152491.1 uncharacterized protein LOC101206898 [Cucumis sativus]1.6e-4094.79Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQET
        MLQFPAFMTQYPWSTR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRKTNSNLVVIGKM+ADNDKEDIEAEDDDADN +ESEAEEFEQET
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQET
XP_008438807.1 PREDICTED: uncharacterized protein LOC103483797 [Cucumis melo]6.3e-4297.92Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQET
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKM+ADNDKEDIEAEDDDADN EESEAEEFEQET
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQET
XP_018813880.1 uncharacterized protein LOC108985877 [Juglans regia]8.0e-3787.88Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDI--EAEDDDADNGEESEAEEFEQETA
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQP +EELLLAMEESDFEEKCNEIRKTNSNLVVIGK + DNDKED   +A+DDDADN EESE EEFEQETA
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDI--EAEDDDADNGEESEAEEFEQETA
XP_022137094.1 uncharacterized protein LOC111008654 [Momordica charantia]2.0e-43100Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQETA
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQETA
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQETA
XP_038894516.1 uncharacterized protein LOC120083062 [Benincasa hispida]7.0e-4196.88Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQET
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSN VVIGKM ADNDKEDIEAEDDDADN EESEAEEFEQET
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQET
TrEMBL top hitse value%identityAlignment
A0A1S3AXA5 uncharacterized protein LOC1034837973.0e-4297.92Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQET
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKM+ADNDKEDIEAEDDDADN EESEAEEFEQET
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQET
A0A5A7UJS1 Transcription termination factor 43.0e-4297.92Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQET
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKM+ADNDKEDIEAEDDDADN EESEAEEFEQET
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQET
A0A6J1C684 uncharacterized protein LOC1110086549.5e-44100Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQETA
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQETA
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQETA
A0A6J1GSM6 uncharacterized protein LOC1114567623.0e-4297.92Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQET
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKM+ADNDKEDIEAEDDDADN EESEAEEFEQET
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQET
A0A6J1JWJ6 uncharacterized protein LOC1114903243.0e-4297.92Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQET
        MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKM+ADNDKEDIEAEDDDADN EESEAEEFEQET
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQET
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G63135.1 unknown protein5.9e-3071.43Show/hide
Query:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKE--DIEAEDDDADNGEESEAEEFEQET
        MLQFP  MTQ+P ST+TIP S+LLP QWPQPQNEE+LLAMEE++FEEKCNEIRK +  L VIGK   +N++E  D EAEDDDADN EES+ EEFEQET
Subjt:  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKE--DIEAEDDDADNGEESEAEEFEQET

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCAGTTTCCGGCTTTCATGACCCAGTACCCCTGGTCTACAAGGACAATTCCGACGTCGTTTTTACTGCCATCCCAGTGGCCCCAACCCCAAAACGAAGAGCTACT
GCTCGCCATGGAAGAGTCTGATTTTGAAGAAAAGTGCAATGAAATCAGGAAGACAAACAGCAACCTGGTGGTCATTGGAAAAATGAGCGCTGACAATGATAAGGAAGATA
TAGAGGCAGAAGATGACGATGCTGACAATGGTGAGGAATCTGAGGCTGAAGAATTTGAGCAGGAAACTGCT
mRNA sequenceShow/hide mRNA sequence
ATGCTGCAGTTTCCGGCTTTCATGACCCAGTACCCCTGGTCTACAAGGACAATTCCGACGTCGTTTTTACTGCCATCCCAGTGGCCCCAACCCCAAAACGAAGAGCTACT
GCTCGCCATGGAAGAGTCTGATTTTGAAGAAAAGTGCAATGAAATCAGGAAGACAAACAGCAACCTGGTGGTCATTGGAAAAATGAGCGCTGACAATGATAAGGAAGATA
TAGAGGCAGAAGATGACGATGCTGACAATGGTGAGGAATCTGAGGCTGAAGAATTTGAGCAGGAAACTGCT
Protein sequenceShow/hide protein sequence
MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMSADNDKEDIEAEDDDADNGEESEAEEFEQETA