; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS020029 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020029
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionBHLH domain-containing protein
Genome locationscaffold22:1313545..1314252
RNA-Seq ExpressionMS020029
SyntenyMS020029
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:2000112 - regulation of cellular macromolecule biosynthetic process (biological process)
GO:0090575 - RNA polymerase II transcription factor complex (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR015660 - Achaete-scute transcription factor-related


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008438283.1 PREDICTED: uncharacterized protein LOC103483440 [Cucumis melo]2.0e-3659.86Show/hide
Query:  QDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHH--HHHHQASRSPGGGGSTLPVVELRDLGS-VIEVMLISDLNRNFLLCQVIAIVEEEGGQVV
        ++L+SQQNQI +VIAYINELKERVE LEK+K+AL    H  H H QA+ +      TLP++E+ DLG+ ++ +MLIS +NR+F+L Q+I+++EEEGGQVV
Subjt:  QDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHH--HHHHQASRSPGGGGSTLPVVELRDLGS-VIEVMLISDLNRNFLLCQVIAIVEEEGGQVV

Query:  NASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELVNQN
        NA  ST+G K+FHSLHI+AKISR+G+ETSRV++RL  LV QN
Subjt:  NASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELVNQN

XP_022137301.1 transcription factor bHLH162-like [Momordica charantia]1.1e-5099.08Show/hide
Query:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLNRNFLLCQVIAIVEEEGGQVVNA
        S+DLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLNRNFLLCQVIAIVEEEGGQVVNA
Subjt:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLNRNFLLCQVIAIVEEEGGQVVNA

Query:  SFSTLGGKI
        SFSTLGGKI
Subjt:  SFSTLGGKI

XP_022954432.1 transcription factor bHLH168-like [Cucurbita moschata]9.8e-3663.04Show/hide
Query:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGS-VIEVMLISDLNRNFLLCQVIAIVEEEGGQVVN
        S+DLLSQQ QISYVIAYI ELKERVE LEK+K AL+   H      S+ P    ST P+VE+R+L S ++ V LIS ++RN +L ++I +VEEEGG+VV+
Subjt:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGS-VIEVMLISDLNRNFLLCQVIAIVEEEGGQVVN

Query:  ASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELV
        ASFSTLG K+FHSLHI+AKISRVG+ETSRVEKRL+ L+
Subjt:  ASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELV

XP_023542199.1 transcription factor bHLH168-like [Cucurbita pepo subsp. pepo]3.4e-3663.77Show/hide
Query:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGS-VIEVMLISDLNRNFLLCQVIAIVEEEGGQVVN
        S+DLLSQQ QISYVIAYINELKERVE LEKKK AL+   H      S+ P    ST P+VE+R+L S ++ V LIS ++RN +L ++I +VEEEGG+VV+
Subjt:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGS-VIEVMLISDLNRNFLLCQVIAIVEEEGGQVVN

Query:  ASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELV
        ASFSTLG K+FHSLHI+AKI RVG+ETSRVEKRL+ L+
Subjt:  ASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELV

XP_031737508.1 transcription factor bHLH162-like [Cucumis sativus]2.2e-3560.28Show/hide
Query:  QDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHH--HHHHQASRSPGGGGSTLPVVELRDLGS-VIEVMLISDLNRNFLLCQVIAIVEEEGGQVV
        Q+L+SQQNQI YVI YINELKERV+ LEK+K+AL+   H  H H+QA+        T P++E+ DLG+ +I ++LIS LNR+F L Q+I+++EEEGGQVV
Subjt:  QDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHH--HHHHQASRSPGGGGSTLPVVELRDLGS-VIEVMLISDLNRNFLLCQVIAIVEEEGGQVV

Query:  NASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELVNQ
        NAS ST+G K+FHSLHI+AKISR+G+ETSRV++RL  LV Q
Subjt:  NASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELVNQ

TrEMBL top hitse value%identityAlignment
A0A1S3AW43 uncharacterized protein LOC1034834409.6e-3759.86Show/hide
Query:  QDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHH--HHHHQASRSPGGGGSTLPVVELRDLGS-VIEVMLISDLNRNFLLCQVIAIVEEEGGQVV
        ++L+SQQNQI +VIAYINELKERVE LEK+K+AL    H  H H QA+ +      TLP++E+ DLG+ ++ +MLIS +NR+F+L Q+I+++EEEGGQVV
Subjt:  QDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHH--HHHHQASRSPGGGGSTLPVVELRDLGS-VIEVMLISDLNRNFLLCQVIAIVEEEGGQVV

Query:  NASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELVNQN
        NA  ST+G K+FHSLHI+AKISR+G+ETSRV++RL  LV QN
Subjt:  NASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELVNQN

A0A6A2XKV6 Putative Polygalacturonase 21.5e-2957.55Show/hide
Query:  SQDLLSQQNQISYVIAYINELKERVEKLEK-KKRALEFTHHHHH-HQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLNRNFLLCQVIAIVEEEGGQVV
        S++ +SQQ+Q+     YI  L+ERVEKL+K K+ A++    +    +A+ +P G  S  PVVELRDLGS IE++LI+ LNRNF+L QVI+I+E+EG +VV
Subjt:  SQDLLSQQNQISYVIAYINELKERVEKLEK-KKRALEFTHHHHH-HQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLNRNFLLCQVIAIVEEEGGQVV

Query:  NASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELV
        +ASFSTLGGKIFHS+H QAK+SRVGVET+R  +RLQEL+
Subjt:  NASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELV

A0A6J1C669 transcription factor bHLH162-like5.2e-5199.08Show/hide
Query:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLNRNFLLCQVIAIVEEEGGQVVNA
        S+DLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLNRNFLLCQVIAIVEEEGGQVVNA
Subjt:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLNRNFLLCQVIAIVEEEGGQVVNA

Query:  SFSTLGGKI
        SFSTLGGKI
Subjt:  SFSTLGGKI

A0A6J1GQZ4 transcription factor bHLH168-like4.7e-3663.04Show/hide
Query:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGS-VIEVMLISDLNRNFLLCQVIAIVEEEGGQVVN
        S+DLLSQQ QISYVIAYI ELKERVE LEK+K AL+   H      S+ P    ST P+VE+R+L S ++ V LIS ++RN +L ++I +VEEEGG+VV+
Subjt:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGS-VIEVMLISDLNRNFLLCQVIAIVEEEGGQVVN

Query:  ASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELV
        ASFSTLG K+FHSLHI+AKISRVG+ETSRVEKRL+ L+
Subjt:  ASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELV

A0A6J1JY79 transcription factor bHLH168-like1.8e-3561.59Show/hide
Query:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGS-VIEVMLISDLNRNFLLCQVIAIVEEEGGQVVN
        S+DLLSQQ QISYVIAYINELKERVE LEK+K AL+   H      S+      ST P+VE+++L S ++ V LIS ++RN +L ++I ++EEEGG+VV+
Subjt:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGS-VIEVMLISDLNRNFLLCQVIAIVEEEGGQVVN

Query:  ASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELV
        ASFSTLG KIFHSLHI+AKISRVG+ETSR+EKRL+ L+
Subjt:  ASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELV

SwissProt top hitse value%identityAlignment
A2WZ60 Protein IRON-RELATED TRANSCRIPTION FACTOR 21.7e-0630.56Show/hide
Query:  LSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTL------PVVE---LRDLGSVIEVMLISDLNRNFL-LCQVIAIVEEEG
        LS    +S V+ YI EL+++VE LE+KK+ L  T        +  PG  GS L      P+V    + D+  +++V L+S++  + L L + I ++E EG
Subjt:  LSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTL------PVVE---LRDLGSVIEVMLISDLNRNFL-LCQVIAIVEEEG

Query:  GQVVNASFST-LGGKIFHSLHIQAKISRVGVETSRVEKRLQELV
           +++S S+  G + F+S+H+Q     +  E     +RL+++V
Subjt:  GQVVNASFST-LGGKIFHSLHIQAKISRVGVETSRVEKRLQELV

F4I4E1 Transcription factor bHLH1673.9e-1133.59Show/hide
Query:  ISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLN-RNFLLCQVIAIVEEEGGQVVNASFSTLGGKI
        I    +Y+ +LKE V  L++KKR L      + ++       G   LP + +R   S IE+ LI DLN +  +L ++++I EEEG QV++A+   L  + 
Subjt:  ISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLN-RNFLLCQVIAIVEEEGGQVVNASFSTLGGKI

Query:  FHSLHIQAKISRVGVETSRVEKRLQELV
         +++  QA ISR+G++ SR+E+R+++++
Subjt:  FHSLHIQAKISRVGVETSRVEKRLQELV

F4JIJ7 Transcription factor bHLH1621.6e-0927.4Show/hide
Query:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGST-------LPVVELRDLGSVIEVMLISDLNRNFLLCQVIAIVEEE
        S + L+  +Q+     YI +L+  VEK  ++KR L  T       +  S     S        LP +E+++ GS+  + L++ L   F+ C++I ++ EE
Subjt:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGST-------LPVVELRDLGSVIEVMLISDLNRNFLLCQVIAIVEEE

Query:  -GGQVVNASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELVN
         G ++ +A +S +   +FH+LH + +    G   S++ +RL+++VN
Subjt:  -GGQVVNASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELVN

Q0JFZ0 Protein IRON-RELATED TRANSCRIPTION FACTOR 21.7e-0630.56Show/hide
Query:  LSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTL------PVVE---LRDLGSVIEVMLISDLNRNFL-LCQVIAIVEEEG
        LS    +S V+ YI EL+++VE LE+KK+ L  T        +  PG  GS L      P+V    + D+  +++V L+S++  + L L + I ++E EG
Subjt:  LSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTL------PVVE---LRDLGSVIEVMLISDLNRNFL-LCQVIAIVEEEG

Query:  GQVVNASFST-LGGKIFHSLHIQAKISRVGVETSRVEKRLQELV
           +++S S+  G + F+S+H+Q     +  E     +RL+++V
Subjt:  GQVVNASFST-LGGKIFHSLHIQAKISRVGVETSRVEKRLQELV

Q9XIJ1 Transcription factor bHLH1684.2e-1332.56Show/hide
Query:  ISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLN-RNFLLCQVIAIVEEEGGQVVNASFSTLGGKI
        I   ++Y+ +LKE+V  L + KR +      +  +       G S LP + +R L S+IE+ L+ DLN +  +L +++++ EEEG QV++A+   L  + 
Subjt:  ISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLN-RNFLLCQVIAIVEEEGGQVVNASFSTLGGKI

Query:  FHSLHIQAKISRVGVETSRVEKRLQELVN
        F+++  QA I R+G++ SR+E+RL+++++
Subjt:  FHSLHIQAKISRVGVETSRVEKRLQELVN

Arabidopsis top hitse value%identityAlignment
AT1G10585.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.8e-1233.59Show/hide
Query:  ISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLN-RNFLLCQVIAIVEEEGGQVVNASFSTLGGKI
        I    +Y+ +LKE V  L++KKR L      + ++       G   LP + +R   S IE+ LI DLN +  +L ++++I EEEG QV++A+   L  + 
Subjt:  ISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLN-RNFLLCQVIAIVEEEGGQVVNASFSTLGGKI

Query:  FHSLHIQAKISRVGVETSRVEKRLQELV
         +++  QA ISR+G++ SR+E+R+++++
Subjt:  FHSLHIQAKISRVGVETSRVEKRLQELV

AT1G10586.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.0e-1432.56Show/hide
Query:  ISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLN-RNFLLCQVIAIVEEEGGQVVNASFSTLGGKI
        I   ++Y+ +LKE+V  L + KR +      +  +       G S LP + +R L S+IE+ L+ DLN +  +L +++++ EEEG QV++A+   L  + 
Subjt:  ISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLN-RNFLLCQVIAIVEEEGGQVVNASFSTLGGKI

Query:  FHSLHIQAKISRVGVETSRVEKRLQELVN
        F+++  QA I R+G++ SR+E+RL+++++
Subjt:  FHSLHIQAKISRVGVETSRVEKRLQELVN

AT1G10586.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.0e-1432.35Show/hide
Query:  LLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLN-RNFLLCQVIAIVEEEGGQVVNASF
        LL     I   ++Y+ +LKE+V  L + KR +      +  +       G S LP + +R L S+IE+ L+ DLN +  +L +++++ EEEG QV++A+ 
Subjt:  LLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLN-RNFLLCQVIAIVEEEGGQVVNASF

Query:  STLGGKIFHSLHIQAKISRVGVETSRVEKRLQELVN
          L  + F+++  QA I R+G++ SR+E+RL+++++
Subjt:  STLGGKIFHSLHIQAKISRVGVETSRVEKRLQELVN

AT2G41240.2 basic helix-loop-helix protein 1003.3e-0533.33Show/hide
Query:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHH-----HHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDL-NRNFLLCQVIAIVEEEG
        +Q  LS    +S  + YI EL+E+V+KL KKK  L F         +  Q S+S  G  S    V    L     ++ IS L         V++ VEE+G
Subjt:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHH-----HHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDL-NRNFLLCQVIAIVEEEG

Query:  GQVVNASFS-TLGGKIFHSLHIQAKISRVGVE
          +V AS S + G ++F+S+H+Q K  +V  E
Subjt:  GQVVNASFS-TLGGKIFHSLHIQAKISRVGVE

AT4G20970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.2e-1027.4Show/hide
Query:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGST-------LPVVELRDLGSVIEVMLISDLNRNFLLCQVIAIVEEE
        S + L+  +Q+     YI +L+  VEK  ++KR L  T       +  S     S        LP +E+++ GS+  + L++ L   F+ C++I ++ EE
Subjt:  SQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGST-------LPVVELRDLGSVIEVMLISDLNRNFLLCQVIAIVEEE

Query:  -GGQVVNASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELVN
         G ++ +A +S +   +FH+LH + +    G   S++ +RL+++VN
Subjt:  -GGQVVNASFSTLGGKIFHSLHIQAKISRVGVETSRVEKRLQELVN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTCACAGGATTTGCTCTCGCAACAGAATCAGATCTCCTACGTCATCGCGTACATAAACGAACTAAAAGAAAGAGTGGAGAAATTGGAGAAAAAGAAACGAGCTTTAGA
ATTTACACATCATCATCATCATCATCAAGCAAGTCGGAGTCCCGGCGGCGGCGGCTCCACGTTGCCGGTGGTTGAACTCAGAGACTTGGGCAGCGTCATTGAAGTAATGC
TCATCAGTGACCTCAACAGAAACTTTTTGCTCTGCCAAGTTATCGCCATCGTCGAGGAGGAAGGAGGCCAAGTCGTCAACGCAAGCTTCTCCACGCTCGGTGGCAAGATC
TTCCACTCTCTCCATATCCAGGCGAAAATTTCTCGAGTGGGAGTAGAGACTTCGAGAGTAGAGAAAAGACTGCAGGAACTGGTGAACCAAAAC
mRNA sequenceShow/hide mRNA sequence
TTTTCACAGGATTTGCTCTCGCAACAGAATCAGATCTCCTACGTCATCGCGTACATAAACGAACTAAAAGAAAGAGTGGAGAAATTGGAGAAAAAGAAACGAGCTTTAGA
ATTTACACATCATCATCATCATCATCAAGCAAGTCGGAGTCCCGGCGGCGGCGGCTCCACGTTGCCGGTGGTTGAACTCAGAGACTTGGGCAGCGTCATTGAAGTAATGC
TCATCAGTGACCTCAACAGAAACTTTTTGCTCTGCCAAGTTATCGCCATCGTCGAGGAGGAAGGAGGCCAAGTCGTCAACGCAAGCTTCTCCACGCTCGGTGGCAAGATC
TTCCACTCTCTCCATATCCAGGCGAAAATTTCTCGAGTGGGAGTAGAGACTTCGAGAGTAGAGAAAAGACTGCAGGAACTGGTGAACCAAAAC
Protein sequenceShow/hide protein sequence
FSQDLLSQQNQISYVIAYINELKERVEKLEKKKRALEFTHHHHHHQASRSPGGGGSTLPVVELRDLGSVIEVMLISDLNRNFLLCQVIAIVEEEGGQVVNASFSTLGGKI
FHSLHIQAKISRVGVETSRVEKRLQELVNQN