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MS020031 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020031
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-H2 finger protein
Genome locationscaffold22:1324045..1324188
RNA-Seq ExpressionMS020031
SyntenyMS020031
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KYP52461.1 putative RING-H2 finger protein ATL5G [Cajanus cajan]2.2e-1677.78Show/hide
Query:  VECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        V+C VCLE+FK+G++CRLLPNCSHSFHVHCIDSW+++TP CPICR
Subjt:  VECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

RWR83326.1 E3 ubiquitin-protein ligase RNF13-like protein [Cinnamomum micranthum f. kanehirae]1.7e-1678.72Show/hide
Query:  SGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        S V+C VCLE+FKMG+ CRLLPNC+HSFH HCIDSWL+KTP CPICR
Subjt:  SGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

XP_007138092.1 hypothetical protein PHAVU_009G179700g [Phaseolus vulgaris]2.2e-1677.78Show/hide
Query:  VECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        V+CVVCL+SFK+G++CRLLPNC+H+FHVHCIDSW++ TPICPICR
Subjt:  VECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

XP_020230286.1 RING-H2 finger protein ATL52 [Cajanus cajan]2.2e-1677.78Show/hide
Query:  VECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        V+C VCLE+FK+G++CRLLPNCSHSFHVHCIDSW+++TP CPICR
Subjt:  VECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

XP_023901349.1 RING-H2 finger protein ATL74-like [Quercus suber]1.7e-1682.98Show/hide
Query:  SGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        S V+C VCLE+FKMGE CRLLPNC HSFHV CIDSWL+KTPICPICR
Subjt:  SGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

TrEMBL top hitse value%identityAlignment
A0A0L9UBR3 RING-type domain-containing protein1.4e-1674.47Show/hide
Query:  SGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        S V+C VCLESFK+G++CRLLPNC+H+FH+HCIDSW++ TPICPICR
Subjt:  SGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

A0A151SCH8 Putative RING-H2 finger protein ATL5G1.1e-1677.78Show/hide
Query:  VECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        V+C VCLE+FK+G++CRLLPNCSHSFHVHCIDSW+++TP CPICR
Subjt:  VECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

A0A1S3TZK4 RING-H2 finger protein ATL39-like1.4e-1674.47Show/hide
Query:  SGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        S V+C VCLESFK+G+ CRLLPNC+H+FH+HCIDSW++ TPICPICR
Subjt:  SGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

A0A3S3MNQ7 E3 ubiquitin-protein ligase RNF13-like protein8.3e-1778.72Show/hide
Query:  SGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        S V+C VCLE+FKMG+ CRLLPNC+HSFH HCIDSWL+KTP CPICR
Subjt:  SGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

V7B0U4 RING-type domain-containing protein1.1e-1677.78Show/hide
Query:  VECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        V+CVVCL+SFK+G++CRLLPNC+H+FHVHCIDSW++ TPICPICR
Subjt:  VECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

SwissProt top hitse value%identityAlignment
Q5EAE9 RING-H2 finger protein ATL432.3e-1152.08Show/hide
Query:  RSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        + G+EC VCL  F+  E+ RLLP C H+FHV C+D+WL     CP+CR
Subjt:  RSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

Q9LX93 E3 ubiquitin-protein ligase RING13.0e-1156.52Show/hide
Query:  GVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        G EC VCL  F+  E  RLLP CSH+FH++CID+WL+    CP+CR
Subjt:  GVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

Q9M0C3 RING-H2 finger protein ATL146.0e-1256.52Show/hide
Query:  GVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        G +CVVC++ F+ G+ CR LP C H FH  C+D WLIK   CPICR
Subjt:  GVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

Q9SL78 Putative RING-H2 finger protein ATL125.0e-1154.17Show/hide
Query:  RSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        + G+EC VCL  F+  EI RLLP C H+FH+ CID WL +   CP+CR
Subjt:  RSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

Q9ZV51 RING-H2 finger protein ATL563.0e-1154.55Show/hide
Query:  ECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        +CVVC + F+ G+ CR LP C H FH  C+D+WL+K   CPICR
Subjt:  ECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

Arabidopsis top hitse value%identityAlignment
AT2G18670.1 RING/U-box superfamily protein2.1e-1254.55Show/hide
Query:  ECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        +CVVC + F+ G+ CR LP C H FH  C+D+WL+K   CPICR
Subjt:  ECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

AT2G20030.1 RING/U-box superfamily protein3.6e-1254.17Show/hide
Query:  RSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        + G+EC VCL  F+  EI RLLP C H+FH+ CID WL +   CP+CR
Subjt:  RSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

AT4G30370.1 RING/U-box superfamily protein4.2e-1356.52Show/hide
Query:  GVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        G +CVVC++ F+ G+ CR LP C H FH  C+D WLIK   CPICR
Subjt:  GVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

AT5G05810.1 RING/U-box superfamily protein1.6e-1252.08Show/hide
Query:  RSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        + G+EC VCL  F+  E+ RLLP C H+FHV C+D+WL     CP+CR
Subjt:  RSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR

AT5G10380.1 RING/U-box superfamily protein2.1e-1256.52Show/hide
Query:  GVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR
        G EC VCL  F+  E  RLLP CSH+FH++CID+WL+    CP+CR
Subjt:  GVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGAGTGGAGTGGAATGTGTGGTTTGTTTGGAGAGTTTCAAAATGGGGGAAATATGCAGATTGTTGCCAAATTGCAGCCATAGTTTCCATGTCCACTGCATCGATTCATG
GCTCATCAAGACACCCATTTGCCCAATTTGTAGG
mRNA sequenceShow/hide mRNA sequence
AGGAGTGGAGTGGAATGTGTGGTTTGTTTGGAGAGTTTCAAAATGGGGGAAATATGCAGATTGTTGCCAAATTGCAGCCATAGTTTCCATGTCCACTGCATCGATTCATG
GCTCATCAAGACACCCATTTGCCCAATTTGTAGG
Protein sequenceShow/hide protein sequence
RSGVECVVCLESFKMGEICRLLPNCSHSFHVHCIDSWLIKTPICPICR