; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS020041 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020041
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-H2 finger protein ATL48
Genome locationscaffold22:1357049..1357897
RNA-Seq ExpressionMS020041
SyntenyMS020041
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007667 - Hypoxia induced protein, domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152465.1 RING-H2 finger protein ATL48 [Cucumis sativus]3.5e-3389.02Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M S+EPNL+EFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNS LGQMLMRARVVVQGATVALMVGTA+YYG+NPWRSS
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

XP_008438139.1 PREDICTED: RING-H2 finger protein ATL48 [Cucumis melo]4.5e-3389.02Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M S+EPNL+EFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNS LGQ+LMRARVVVQGATVALMVGTAFYYG+NPWRSS
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

XP_022954948.1 RING-H2 finger protein ATL48-like [Cucurbita moschata]4.5e-3391.46Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M S EPNL+EFFVEKKRARNPLVPVGA VTAGVLTAGLISFRQGNS LGQMLMRARVVVQGATVALMVGTAFYYG+NPWR S
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

XP_023541211.1 RING-H2 finger protein ATL48-like [Cucurbita pepo subsp. pepo]1.2e-3392.68Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M S EPNL+EFFVEKKRARNPLVP+GALVTAGVLTAGLISFRQGNS LGQMLMRARVVVQGATVALMVGTAFYYGDNPWR S
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

XP_038895243.1 RING-H2 finger protein ATL48-like [Benincasa hispida]6.3e-3595.12Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M SEEPNL+EFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNS LGQMLMRARVVVQGATVALMVGTAFYYG+NPWRSS
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

TrEMBL top hitse value%identityAlignment
A0A0A0LTF8 HIG1 domain-containing protein1.7e-3389.02Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M S+EPNL+EFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNS LGQMLMRARVVVQGATVALMVGTA+YYG+NPWRSS
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

A0A1S3AVM7 RING-H2 finger protein ATL482.2e-3389.02Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M S+EPNL+EFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNS LGQ+LMRARVVVQGATVALMVGTAFYYG+NPWRSS
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

A0A5A7UHA1 RING-H2 finger protein ATL482.2e-3389.02Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M S+EPNL+EFFVEKKRARNPLVP+GAL TAGVLTAGLISFR+GNS LGQ+LMRARVVVQGATVALMVGTAFYYG+NPWRSS
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

A0A6J1GSJ9 RING-H2 finger protein ATL48-like2.2e-3391.46Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M S EPNL+EFFVEKKRARNPLVPVGA VTAGVLTAGLISFRQGNS LGQMLMRARVVVQGATVALMVGTAFYYG+NPWR S
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

A0A6J1K3J5 RING-H2 finger protein ATL48-like6.4e-3391.46Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS
        M S E NL+EFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNS LGQMLMRARVVVQGATVALMVGTAFYYG+NPWR S
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS

SwissProt top hitse value%identityAlignment
Q4VC39 Putative HIG1 domain family member 2B2.6e-0742.86Show/hide
Query:  SEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATV-ALMVGTA
        S     +E F+ K R  NP+VP+G L TA VLT GL  F QGNS   +++M  ++  QG T+ A+++G A
Subjt:  SEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATV-ALMVGTA

Q6CBQ8 Respiratory supercomplex factor 1, mitochondrial9.9e-0744.83Show/hide
Query:  PLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNP
        PLVP+G L T G L     + R GN      +  ARV  QG TVA ++G A YYG +P
Subjt:  PLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNP

Q7X843 RING-H2 finger protein ATL484.4e-3180Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWR
        M S EP++E+ F EKKR RNPLVP+GAL+TAGVLTAGLISFR+GNS LGQ+LMRARVVVQGATVALMVGT +YYGDNPW+
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWR

Q9BW72 HIG1 domain family member 2A, mitochondrial3.6e-0950Show/hide
Query:  NLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATV-ALMVGTA
        + +E FV K R  NP+VP+G L TA  LT GL SF +GNS   Q++MR R+  QG TV A+++G A
Subjt:  NLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATV-ALMVGTA

Q9CQJ1 HIG1 domain family member 2A1.8e-0845.71Show/hide
Query:  SEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGAT-VALMVGTA
        S     +E F+ K R  NP+VP+G L TA  LT GL  F +G SH  Q++MR R+  QG T VA+++G A
Subjt:  SEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGAT-VALMVGTA

Arabidopsis top hitse value%identityAlignment
AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein3.1e-3280Show/hide
Query:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWR
        M S EP++E+ F EKKR RNPLVP+GAL+TAGVLTAGLISFR+GNS LGQ+LMRARVVVQGATVALMVGT +YYGDNPW+
Subjt:  MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTCAGAGGAACCCAATTTGGAAGAATTCTTCGTTGAGAAGAAGCGCGCTAGGAACCCTCTCGTCCCCGTCGGTGCACTTGTCACTGCTGGCGTTCTCACTGCTGG
GTTAATCAGTTTCAGACAAGGCAACTCTCATCTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGTCCAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTTCTACT
ATGGAGATAATCCATGGCGATCGAGT
mRNA sequenceShow/hide mRNA sequence
ATGGGCTCAGAGGAACCCAATTTGGAAGAATTCTTCGTTGAGAAGAAGCGCGCTAGGAACCCTCTCGTCCCCGTCGGTGCACTTGTCACTGCTGGCGTTCTCACTGCTGG
GTTAATCAGTTTCAGACAAGGCAACTCTCATCTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGTCCAAGGTGCTACAGTAGCACTGATGGTTGGCACGGCTTTCTACT
ATGGAGATAATCCATGGCGATCGAGT
Protein sequenceShow/hide protein sequence
MGSEEPNLEEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSHLGQMLMRARVVVQGATVALMVGTAFYYGDNPWRSS