; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS020043 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020043
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPolysacc_synt_4 domain-containing protein
Genome locationscaffold22:1365737..1366164
RNA-Seq ExpressionMS020043
SyntenyMS020043
Gene Ontology termsGO:0045492 - xylan biosynthetic process (biological process)
GO:0005622 - intracellular (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR006514 - IRX15/IRX15L/IGXM
IPR021148 - Polysaccharide biosynthesis domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571959.1 Protein IRX15-LIKE protein, partial [Cucurbita argyrosperma subsp. sororia]9.5e-4763.33Show/hide
Query:  SANTKLIFHHPSIRKKGLSA-----------PRRCLFSFLTFFTLAFTLTLINSAF--------------------------LHYAAADTNSIKPHMRSG
        +AN KLI  HPSI K+GL+A           PRR LFSFLTFFTL FTLTLINS F                          +HYAA DTNS KPHM + 
Subjt:  SANTKLIFHHPSIRKKGLSA-----------PRRCLFSFLTFFTLAFTLTLINSAF--------------------------LHYAAADTNSIKPHMRSG

Query:  ELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA
        ELSSIAAAL+PCSP+CNFLIFGL HESLLWRA      TVFLD NEF VSKFEQSNP  EAYDVQYTTKVSQMKELLIQA
Subjt:  ELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA

KAG7011645.1 Protein IRX15-LIKE protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-4663.33Show/hide
Query:  SANTKLIFHHPSIRKKGLSA-----------PRRCLFSFLTFFTLAFTLTLINSAF--------------------------LHYAAADTNSIKPHMRSG
        +AN KLI  HPSI K+GL+A           PRR LFSFLTFFTL FTLTLINS F                          +HYAA DTNS KPHM + 
Subjt:  SANTKLIFHHPSIRKKGLSA-----------PRRCLFSFLTFFTLAFTLTLINSAF--------------------------LHYAAADTNSIKPHMRSG

Query:  ELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA
        ELSSIAAAL+PCSP CNFLIFGL HESLLWRA      TVFLD NEF VSKFEQSNP  EAYDVQYTTKVSQMKELLIQA
Subjt:  ELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA

XP_022155585.1 protein IRX15-LIKE-like [Momordica charantia]4.0e-5369.83Show/hide
Query:  SANTKLIFHHPSIRKKGLS-------APRRCLFSFLTFFTLAFTLTLINSAF-----------------------------LHYAAADTNSIKPHMRSGE
        SAN KLI  HPSI K+GLS       APRRCLFSFLTFFTLAFTLTLINS F                             LHYAAADTNS KPHM SGE
Subjt:  SANTKLIFHHPSIRKKGLS-------APRRCLFSFLTFFTLAFTLTLINSAF-----------------------------LHYAAADTNSIKPHMRSGE

Query:  LSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA
        LSSIAAALAPCSP CNFLIFGLNHESLLWRA      TVFLD NEFQVSKFEQSNP SEAYDVQYTTKVSQMKELL+QA
Subjt:  LSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA

XP_022972516.1 protein IRX15-LIKE-like [Cucurbita maxima]4.3e-4763.89Show/hide
Query:  SANTKLIFHHPSIRKKGLSA-----------PRRCLFSFLTFFTLAFTLTLINSAF--------------------------LHYAAADTNSIKPHMRSG
        +AN KLI  HPSI K+GL+A           PRR LFSFLTFFTLAFTLTLINS F                          +HYAA DTNS KPHM + 
Subjt:  SANTKLIFHHPSIRKKGLSA-----------PRRCLFSFLTFFTLAFTLTLINSAF--------------------------LHYAAADTNSIKPHMRSG

Query:  ELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA
        ELSSIAAAL+PCSP CNFLIFGL HESLLWRA      TVFLD NEF VSKFEQSNP  EAYDVQYTTKVSQMKELLIQA
Subjt:  ELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA

XP_023553830.1 protein IRX15-LIKE-like [Cucurbita pepo subsp. pepo]1.2e-4663.33Show/hide
Query:  SANTKLIFHHPSIRKKGLSA-----------PRRCLFSFLTFFTLAFTLTLINSAF--------------------------LHYAAADTNSIKPHMRSG
        +AN KLI  HPSI K+GL+A           PRR LFSFLTFFTL FTLTLINS F                          +HYAA DTNS KPHM + 
Subjt:  SANTKLIFHHPSIRKKGLSA-----------PRRCLFSFLTFFTLAFTLTLINSAF--------------------------LHYAAADTNSIKPHMRSG

Query:  ELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA
        ELSSIAAAL+PCSP CNFLIFGL HESLLWRA      TVFLD NEF VSKFEQSNP  EAYDVQYTTKVSQMKELLIQA
Subjt:  ELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA

TrEMBL top hitse value%identityAlignment
A0A1S3C105 protein IRX15-LIKE-like8.7e-4661.08Show/hide
Query:  SANTKLIFHHPSIRKKGLS-----------APRRCLFSFLTFFTLAFTLTLINSAF-------------------------------LHYAAADTNSIKP
        +AN KLI  HPSI K+ L            +PRR LFSFLTFFTLAFTLTLINS F                               LHYAAADTNS KP
Subjt:  SANTKLIFHHPSIRKKGLS-----------APRRCLFSFLTFFTLAFTLTLINSAF-------------------------------LHYAAADTNSIKP

Query:  HMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA
        HM + ELSSIAAAL+PC+P CNFLIFGL HESLLWRA      TVFLD NEFQVSKFEQSNP +EAYDVQYTTKVS+MKELL QA
Subjt:  HMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA

A0A5A7SPS3 Protein IRX15-LIKE-like8.7e-4661.08Show/hide
Query:  SANTKLIFHHPSIRKKGLS-----------APRRCLFSFLTFFTLAFTLTLINSAF-------------------------------LHYAAADTNSIKP
        +AN KLI  HPSI K+ L            +PRR LFSFLTFFTLAFTLTLINS F                               LHYAAADTNS KP
Subjt:  SANTKLIFHHPSIRKKGLS-----------APRRCLFSFLTFFTLAFTLTLINSAF-------------------------------LHYAAADTNSIKP

Query:  HMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA
        HM + ELSSIAAAL+PC+P CNFLIFGL HESLLWRA      TVFLD NEFQVSKFEQSNP +EAYDVQYTTKVS+MKELL QA
Subjt:  HMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA

A0A6J1DMU5 protein IRX15-LIKE-like1.9e-5369.83Show/hide
Query:  SANTKLIFHHPSIRKKGLS-------APRRCLFSFLTFFTLAFTLTLINSAF-----------------------------LHYAAADTNSIKPHMRSGE
        SAN KLI  HPSI K+GLS       APRRCLFSFLTFFTLAFTLTLINS F                             LHYAAADTNS KPHM SGE
Subjt:  SANTKLIFHHPSIRKKGLS-------APRRCLFSFLTFFTLAFTLTLINSAF-----------------------------LHYAAADTNSIKPHMRSGE

Query:  LSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA
        LSSIAAALAPCSP CNFLIFGLNHESLLWRA      TVFLD NEFQVSKFEQSNP SEAYDVQYTTKVSQMKELL+QA
Subjt:  LSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA

A0A6J1GJE6 protein IRX15-LIKE-like6.0e-4763.33Show/hide
Query:  SANTKLIFHHPSIRKKGLSA-----------PRRCLFSFLTFFTLAFTLTLINSAF--------------------------LHYAAADTNSIKPHMRSG
        +AN KLI  HPSI K+GL+A           PRR LFSFLTFFTL FTLTLINS F                          +HYAA DTNS KPHM + 
Subjt:  SANTKLIFHHPSIRKKGLSA-----------PRRCLFSFLTFFTLAFTLTLINSAF--------------------------LHYAAADTNSIKPHMRSG

Query:  ELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA
        ELSSIAAAL+PCSP CNFLIFGL HESLLWRA      TVFLD NEF VSKFEQSNP  EAYDVQYTTKVSQMKELLIQA
Subjt:  ELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA

A0A6J1I666 protein IRX15-LIKE-like2.1e-4763.89Show/hide
Query:  SANTKLIFHHPSIRKKGLSA-----------PRRCLFSFLTFFTLAFTLTLINSAF--------------------------LHYAAADTNSIKPHMRSG
        +AN KLI  HPSI K+GL+A           PRR LFSFLTFFTLAFTLTLINS F                          +HYAA DTNS KPHM + 
Subjt:  SANTKLIFHHPSIRKKGLSA-----------PRRCLFSFLTFFTLAFTLTLINSAF--------------------------LHYAAADTNSIKPHMRSG

Query:  ELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA
        ELSSIAAAL+PCSP CNFLIFGL HESLLWRA      TVFLD NEF VSKFEQSNP  EAYDVQYTTKVSQMKELLIQA
Subjt:  ELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA

SwissProt top hitse value%identityAlignment
Q6NMK1 Glucuronoxylan 4-O-methyltransferase 16.9e-0836.08Show/hide
Query:  AFLHYAAADTNSIKPHMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELL
        A +HY+   T+ I P     E++  +  L   SP CNFL+FGL H+SL+W +      TVFL+ +E  + + ++  P  E+Y V Y +KV+Q   L+
Subjt:  AFLHYAAADTNSIKPHMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELL

Q9FH92 Protein IRX15-LIKE1.1e-2138.07Show/hide
Query:  SANTKLIFHHPSIRKKGLSAPRRCLFSFLTFFTLAFTLTL--------------------INS----------------AFLHYAAADTNSIKPHMRSGE
        + NTKLI  HP I+K+  S  R  L +F++FFT+AF LTL                    +NS                A LHYA+   +S   HM  GE
Subjt:  SANTKLIFHHPSIRKKGLSAPRRCLFSFLTFFTLAFTLTL--------------------INS----------------AFLHYAAADTNSIKPHMRSGE

Query:  LSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELL
        + SI+  L  CSP CN L+FGL HE+LLW++      TVF++ N +  + FE+ +P+ E +DVQYTTK  + +EL+
Subjt:  LSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELL

Q9LQ32 Glucuronoxylan 4-O-methyltransferase 37.7e-0732Show/hide
Query:  INSAFLHYAAADTNSIKPHMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLW----RASTTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELL
        ++ A +HY    T+++ P     E+S     L   SP CNFL+FGL H+SL+W        T+F++ ++  ++   +  P+ E+Y V Y TKV    +L+
Subjt:  INSAFLHYAAADTNSIKPHMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLW----RASTTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELL

Q9SNE5 Protein IRREGULAR XYLEM 151.0e-1934.05Show/hide
Query:  SANTKLIFHHPSIRKKGLSAPRRCLFSFLTFFTLAFTLTLIN------------------------------------------SAFLHYAAADTNSIKP
        + NTKLI  HP I+K+  S  R  L +F++FFT+ F LTL+                                           +A LHYA+   +S   
Subjt:  SANTKLIFHHPSIRKKGLSAPRRCLFSFLTFFTLAFTLTLIN------------------------------------------SAFLHYAAADTNSIKP

Query:  HMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA
        HM  GE+ SI+  L  C+P CN L+FGL HE+LLW++      TVF++ N +  + FE+ +P+ + +DVQYTTK  +  EL+  A
Subjt:  HMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA

Q9T0F7 Glucuronoxylan 4-O-methyltransferase 26.9e-0835.29Show/hide
Query:  TLINSAFLHYAAADTNSIKPHMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLW----RASTTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKE
        T ++ A +HY    T+ I P     E+S     L   SP CNFL+FGL H+SL+W        T+FL+ +E  +    +  P+ E+Y V Y TKV    +
Subjt:  TLINSAFLHYAAADTNSIKPHMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLW----RASTTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKE

Query:  LL
        L+
Subjt:  LL

Arabidopsis top hitse value%identityAlignment
AT1G09610.1 Protein of unknown function (DUF579)4.9e-0936.08Show/hide
Query:  AFLHYAAADTNSIKPHMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELL
        A +HY+   T+ I P     E++  +  L   SP CNFL+FGL H+SL+W +      TVFL+ +E  + + ++  P  E+Y V Y +KV+Q   L+
Subjt:  AFLHYAAADTNSIKPHMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELL

AT1G71690.1 Protein of unknown function (DUF579)7.6e-1036.08Show/hide
Query:  AFLHYAAADTNSIKPHMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLW----RASTTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELL
        A +HYA   ++++ P     E+S     L   SP CNFL+FGL H+SL+W        T+FLD +E  + +  +  P  E+Y V+Y TKV   + L+
Subjt:  AFLHYAAADTNSIKPHMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLW----RASTTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELL

AT2G15440.1 Protein of unknown function (DUF579)3.6e-2042.05Show/hide
Query:  SANTKLIF--HHPSIRKKGLSA-----PRRCLF-SFLTFFTLAFTLTLINS--------------------------AFLHYAAADTNSIKPH--MRSGE
        + NT LI   HH  +  K  SA       R LF  FL+FFTL F+ +L +S                          A LHY    T+S  P+  M   E
Subjt:  SANTKLIF--HHPSIRKKGLSA-----PRRCLF-SFLTFFTLAFTLTLINS--------------------------AFLHYAAADTNSIKPH--MRSGE

Query:  LSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELL
        LS+I+  +    P CN LIFGL HESLLWR+      TVF+D + + VSKFEQSNP  EAY+V Y+TKVSQ K+LL
Subjt:  LSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELL

AT3G50220.1 Protein of unknown function (DUF579)7.3e-2134.05Show/hide
Query:  SANTKLIFHHPSIRKKGLSAPRRCLFSFLTFFTLAFTLTLIN------------------------------------------SAFLHYAAADTNSIKP
        + NTKLI  HP I+K+  S  R  L +F++FFT+ F LTL+                                           +A LHYA+   +S   
Subjt:  SANTKLIFHHPSIRKKGLSAPRRCLFSFLTFFTLAFTLTLIN------------------------------------------SAFLHYAAADTNSIKP

Query:  HMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA
        HM  GE+ SI+  L  C+P CN L+FGL HE+LLW++      TVF++ N +  + FE+ +P+ + +DVQYTTK  +  EL+  A
Subjt:  HMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA

AT5G67210.1 Protein of unknown function (DUF579)7.8e-2338.07Show/hide
Query:  SANTKLIFHHPSIRKKGLSAPRRCLFSFLTFFTLAFTLTL--------------------INS----------------AFLHYAAADTNSIKPHMRSGE
        + NTKLI  HP I+K+  S  R  L +F++FFT+AF LTL                    +NS                A LHYA+   +S   HM  GE
Subjt:  SANTKLIFHHPSIRKKGLSAPRRCLFSFLTFFTLAFTLTL--------------------INS----------------AFLHYAAADTNSIKPHMRSGE

Query:  LSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELL
        + SI+  L  CSP CN L+FGL HE+LLW++      TVF++ N +  + FE+ +P+ E +DVQYTTK  + +EL+
Subjt:  LSSIAAALAPCSPTCNFLIFGLNHESLLWRA----STTVFLDGNEFQVSKFEQSNPDSEAYDVQYTTKVSQMKELL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGCCTCTCTCCGCCAACACCAAGCTTATCTTCCACCACCCCTCCATCCGCAAGAAAGGCCTCTCCGCCCCTCGCCGCTGCCTCTTCTCTTTCCTCACCTTCTTCACTCT
CGCCTTCACCCTCACCCTCATCAACTCCGCCTTCCTCCACTACGCCGCCGCCGACACGAACTCCATCAAGCCCCACATGAGATCCGGCGAGCTTTCCTCCATCGCCGCCG
CCCTCGCCCCGTGCTCCCCGACCTGTAATTTCCTTATCTTCGGCCTCAATCACGAATCCCTCCTCTGGCGCGCCTCAACCACCGTCTTCCTCGACGGGAACGAGTTCCAG
GTCTCCAAATTCGAGCAATCGAATCCCGACTCCGAAGCCTACGATGTCCAATACACGACCAAAGTCAGCCAGATGAAGGAGCTCCTGATTCAGGCC
mRNA sequenceShow/hide mRNA sequence
TTGCCTCTCTCCGCCAACACCAAGCTTATCTTCCACCACCCCTCCATCCGCAAGAAAGGCCTCTCCGCCCCTCGCCGCTGCCTCTTCTCTTTCCTCACCTTCTTCACTCT
CGCCTTCACCCTCACCCTCATCAACTCCGCCTTCCTCCACTACGCCGCCGCCGACACGAACTCCATCAAGCCCCACATGAGATCCGGCGAGCTTTCCTCCATCGCCGCCG
CCCTCGCCCCGTGCTCCCCGACCTGTAATTTCCTTATCTTCGGCCTCAATCACGAATCCCTCCTCTGGCGCGCCTCAACCACCGTCTTCCTCGACGGGAACGAGTTCCAG
GTCTCCAAATTCGAGCAATCGAATCCCGACTCCGAAGCCTACGATGTCCAATACACGACCAAAGTCAGCCAGATGAAGGAGCTCCTGATTCAGGCC
Protein sequenceShow/hide protein sequence
LPLSANTKLIFHHPSIRKKGLSAPRRCLFSFLTFFTLAFTLTLINSAFLHYAAADTNSIKPHMRSGELSSIAAALAPCSPTCNFLIFGLNHESLLWRASTTVFLDGNEFQ
VSKFEQSNPDSEAYDVQYTTKVSQMKELLIQA