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MS020089 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020089
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranscription factor PRE3-like
Genome locationscaffold22:1624037..1624394
RNA-Seq ExpressionMS020089
SyntenyMS020089
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573012.1 putative serine/threonine-protein kinase PBL3, partial [Cucurbita argyrosperma subsp. sororia]1.1e-3290Show/hide
Query:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT
        MSGRSRSR S+  VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LHREVDDLSERLS LLATSDTAQAAIIRSLLT
Subjt:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT

XP_004152438.1 transcription factor PRE3 [Cucumis sativus]1.1e-3290Show/hide
Query:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT
        MSGRSRSR S+  VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LHREVDDLSERLS LLATSDTAQAAIIRSLLT
Subjt:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT

XP_016899225.1 PREDICTED: transcription factor PRE3-like [Cucumis melo]2.2e-3391.11Show/hide
Query:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT
        MSGRSRSR S+ GVRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LHREVDDLSERLS LLATSDTAQAAIIRSLLT
Subjt:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT

XP_022137442.1 transcription factor PRE3-like [Momordica charantia]2.1e-39100Show/hide
Query:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT
        MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT
Subjt:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT

XP_022955105.1 transcription factor PRE3-like [Cucurbita moschata]1.1e-3290Show/hide
Query:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT
        MSGRSRSR S+  VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LHREVDDLSERLS LLATSDTAQAAIIRSLLT
Subjt:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT

TrEMBL top hitse value%identityAlignment
A0A0A0LQQ1 BHLH domain-containing protein5.3e-3390Show/hide
Query:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT
        MSGRSRSR S+  VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LHREVDDLSERLS LLATSDTAQAAIIRSLLT
Subjt:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT

A0A1S4DU40 transcription factor PRE3-like1.1e-3391.11Show/hide
Query:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT
        MSGRSRSR S+ GVRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LHREVDDLSERLS LLATSDTAQAAIIRSLLT
Subjt:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT

A0A6J1C896 transcription factor PRE3-like1.0e-39100Show/hide
Query:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT
        MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT
Subjt:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT

A0A6J1GU92 transcription factor PRE3-like5.3e-3390Show/hide
Query:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT
        MSGRSRSR S+  VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LHREVDDLSERLS LLATSDTAQAAIIRSLLT
Subjt:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT

A0A6J1K5U5 transcription factor PRE3-like4.5e-3288.89Show/hide
Query:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT
        MSG SRSR S+  VRISDEQITDL+HKLQQLLPEIRN HSDKVS+AKVLQETCNYIR LHREVDDLSERLS LLATSDTAQAAIIRSLLT
Subjt:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI74.8e-2368.13Show/hide
Query:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL
        MS RSRSR S+   RI+DEQI DL+ KLQ LLPE R   +D+V SA+VLQETC+YIR LHREVDDLSERL+ LLA +D  TAQAA+IR LL
Subjt:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL

B8APB5 Transcription factor ILI63.3e-2472.22Show/hide
Query:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL
        S RSRSR S G  RI+DEQI+DL+ KLQ LLPE R   +D+V S++VLQETCNYIR LH+EVDDLSERLS LLATSD  +AQAAIIRSLL
Subjt:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL

Q0DUR2 Transcription factor ILI63.3e-2472.22Show/hide
Query:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL
        S RSRSR S G  RI+DEQI+DL+ KLQ LLPE R   +D+V S++VLQETCNYIR LH+EVDDLSERLS LLATSD  +AQAAIIRSLL
Subjt:  SGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL

Q8GW32 Transcription factor PRE62.0e-2469.89Show/hide
Query:  MSGR--SRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL
        MS R  SRSR S G  RISD+QI+DL+ KLQ L+PE+R   SDKVS++KVLQETCNYIR LHREVDDLS+RLS LLA++D  +A+AAIIRSLL
Subjt:  MSGR--SRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL

Q9CA64 Transcription factor PRE31.7e-2877.17Show/hide
Query:  MSG-RSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNA-HSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT
        MSG RSRSR S+G  RIS++QI DLI KLQQLLPE+R++  SDKVS+A+VLQ+TCNYIR LHREVDDLSERLS LLA SDTAQAA+IRSLLT
Subjt:  MSG-RSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNA-HSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.4e-2569.89Show/hide
Query:  MSGR--SRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL
        MS R  SRSR S G  RISD+QI+DL+ KLQ L+PE+R   SDKVS++KVLQETCNYIR LHREVDDLS+RLS LLA++D  +A+AAIIRSLL
Subjt:  MSGR--SRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.2e-2977.17Show/hide
Query:  MSG-RSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNA-HSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT
        MSG RSRSR S+G  RIS++QI DLI KLQQLLPE+R++  SDKVS+A+VLQ+TCNYIR LHREVDDLSERLS LLA SDTAQAA+IRSLLT
Subjt:  MSG-RSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNA-HSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.6e-2161.96Show/hide
Query:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEI-RNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLL--ATSDTAQAAIIRSLL
        MS R RSR ++   RISD+Q+ DL+ KL+Q LPEI     SDKVS++KVLQETCNYIR+LHREVD+LS+RLS LL     D+ +AA+IRSLL
Subjt:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEI-RNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLL--ATSDTAQAAIIRSLL

AT5G15160.1 BANQUO 24.6e-2159.78Show/hide
Query:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIR-NAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL
        MS   RSR ++   RISD+QITDLI KL+Q +PEIR N  S+ VS++KVLQETCNYIR L++E DDLS+RL+ LL + D  + QAA+IRSL+
Subjt:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIR-NAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSD--TAQAAIIRSLL

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein6.1e-2161.96Show/hide
Query:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEI-RNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLAT--SDTAQAAIIRSLL
        MS R RSR S+   RISD Q+ DL+ KL+Q+LPEI +   SDK S++KVLQETCNYIR L+REVD+LSERLS LL +   D+ +AA+IRSLL
Subjt:  MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEI-RNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLAT--SDTAQAAIIRSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGGAGATCTCGTTCGAGGCCATCAGCTGGTGGTGTGAGAATCAGCGACGAACAGATCACCGACCTCATCCACAAGCTCCAACAGCTCTTGCCTGAGATTCGCAA
CGCCCATTCCGACAAGGTTTCGTCTGCAAAGGTTTTGCAGGAAACGTGCAACTACATTCGGAGGCTACACCGGGAGGTGGACGATCTGAGCGAGCGGCTGTCGGGGTTGT
TGGCGACGTCGGACACGGCCCAAGCGGCCATTATAAGAAGCTTGCTCACG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGGAGATCTCGTTCGAGGCCATCAGCTGGTGGTGTGAGAATCAGCGACGAACAGATCACCGACCTCATCCACAAGCTCCAACAGCTCTTGCCTGAGATTCGCAA
CGCCCATTCCGACAAGGTTTCGTCTGCAAAGGTTTTGCAGGAAACGTGCAACTACATTCGGAGGCTACACCGGGAGGTGGACGATCTGAGCGAGCGGCTGTCGGGGTTGT
TGGCGACGTCGGACACGGCCCAAGCGGCCATTATAAGAAGCTTGCTCACG
Protein sequenceShow/hide protein sequence
MSGRSRSRPSAGGVRISDEQITDLIHKLQQLLPEIRNAHSDKVSSAKVLQETCNYIRRLHREVDDLSERLSGLLATSDTAQAAIIRSLLT