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MS020105 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020105
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerases II, IV and V subunit 12
Genome locationscaffold22:1739234..1739583
RNA-Seq ExpressionMS020105
SyntenyMS020105
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006591 - RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR039747 - DNA-directed RNA polymerases I, II, and III subunit RPABC4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF34914.1 DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide, putative [Ricinus communis]4.9e-18100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
KAA0031913.1 putative DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide [Cucumis melo var. makuwa]4.9e-18100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
KAG6572995.1 DNA-directed RNA polymerases II, IV and V subunit 12, partial [Cucurbita argyrosperma subsp. sororia]4.9e-18100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
KAG7012179.1 DNA-directed RNA polymerases II, IV and V subunit 12, partial [Cucurbita argyrosperma subsp. argyrosperma]4.9e-18100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
XP_015579873.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Ricinus communis]4.9e-18100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
TrEMBL top hitse value%identityAlignment
A0A1S4E4H5 DNA-directed RNA polymerases II, IV and V subunit 122.4e-18100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
A0A5D3BK18 Putative DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide2.4e-18100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
A0A6J1GTY0 DNA-directed RNA polymerases II, IV and V subunit 122.4e-18100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
A0A6J1KJQ4 DNA-directed RNA polymerases II, IV and V subunit 122.4e-18100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
B9SNE7 DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide, putative2.4e-18100Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
        MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
SwissProt top hitse value%identityAlignment
P53803 DNA-directed RNA polymerases I, II, and III subunit RPABC41.3e-1061.9Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
        P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
Q3ZBC0 DNA-directed RNA polymerases I, II, and III subunit RPABC41.3e-1061.9Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
        P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
Q63871 DNA-directed RNA polymerases I, II, and III subunit RPABC41.3e-1061.9Show/hide
Query:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
        P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R
Subjt:  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
Q9C8M4 DNA-directed RNA polymerase subunit 12-like protein1.2e-1173.17Show/hide
Query:  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR
        D QPE  V Y+CGDCG EN LK+GDV QCR+CG+RILYKKR
Subjt:  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR
Q9FLM8 DNA-directed RNA polymerases II, IV and V subunit 121.3e-1888.64Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
        MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
Arabidopsis top hitse value%identityAlignment
AT1G53690.1 DNA directed RNA polymerase, 7 kDa subunit8.6e-1373.17Show/hide
Query:  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR
        D QPE  V Y+CGDCG EN LK+GDV QCR+CG+RILYKKR
Subjt:  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR
AT5G41010.1 DNA directed RNA polymerase, 7 kDa subunit9.5e-2088.64Show/hide
Query:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR
        MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR
Subjt:  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTCAACCTGAACCAGTCAGCTACATCTGTGGAGATTGTGGAATGGAGAATACCCTGAAGCAGGGTGATGTTATACAATGCCGAGAGTGTGGTTATCGTATTCT
CTACAAGAAGCGCACCCGTCGC
mRNA sequenceShow/hide mRNA sequence
ATGGATCCTCAACCTGAACCAGTCAGCTACATCTGTGGAGATTGTGGAATGGAGAATACCCTGAAGCAGGGTGATGTTATACAATGCCGAGAGTGTGGTTATCGTATTCT
CTACAAGAAGCGCACCCGTCGC
Protein sequenceShow/hide protein sequence
MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR