CuGenDBv2

Gene ID	MS020108
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CDT1 domain-containing protein
Genome location	scaffold22:1769813..1770080
RNA-Seq Expression	MS020108
Synteny	MS020108
Gene Ontology terms	GO:0000076 - DNA replication checkpoint (biological process) GO:0000278 - mitotic cell cycle (biological process) GO:0030174 - regulation of DNA-dependent DNA replication initiation (biological process) GO:0071163 - DNA replication preinitiation complex assembly (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0070182 - DNA polymerase binding (molecular function)
InterPro domains	IPR000651 - Ras-like guanine nucleotide exchange factor, N-terminal IPR032054 - DNA replication factor Cdt1, C-terminal IPR038090 - DNA replication factor Cdt1, C-terminal WH domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008437096.1 PREDICTED: CDT1-like protein a, chloroplastic isoform X1 [Cucumis melo]

9.4e-13

58.21

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Query:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK
        ++++ ++ L + V  VY+IF+S+NC  ITKEEL+HKI+  CLDITE REVEE +EQL  LVP WISK
Subjt:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK

XP_008437112.1 PREDICTED: CDT1-like protein a, chloroplastic isoform X2 [Cucumis melo]

9.4e-13

58.21

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Query:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK
        ++++ ++ L + V  VY+IF+S+NC  ITKEEL+HKI+  CLDITE REVEE +EQL  LVP WISK
Subjt:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK

XP_011651063.1 CDT1-like protein a, chloroplastic [Cucumis sativus]

9.4e-13

58.21

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Query:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK
        ++++ ++ L + V  VY+IF+S+NC  ITKEEL+HKI+  CLDITE REVEE +EQL  LVP WISK
Subjt:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK

XP_022137298.1 CDT1-like protein b [Momordica charantia]

7.2e-29

98.51

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Query:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK
        VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWIS+
Subjt:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK

XP_038893531.1 CDT1-like protein a, chloroplastic [Benincasa hispida]

2.1e-12

56.72

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Query:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK
        + ++ ++ L + V  VY+IF+S+NC  ITKEEL+HKI+  CLDITE REVE+ +EQL  LVP WISK
Subjt:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQM9 CDT1 domain-containing protein

4.6e-13

58.21

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Query:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK
        ++++ ++ L + V  VY+IF+S+NC  ITKEEL+HKI+  CLDITE REVEE +EQL  LVP WISK
Subjt:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK

A0A1S3AT80 CDT1-like protein a, chloroplastic isoform X2

4.6e-13

58.21

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Query:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK
        ++++ ++ L + V  VY+IF+S+NC  ITKEEL+HKI+  CLDITE REVEE +EQL  LVP WISK
Subjt:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK

A0A1S3ATS0 CDT1-like protein a, chloroplastic isoform X1

4.6e-13

58.21

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Query:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK
        ++++ ++ L + V  VY+IF+S+NC  ITKEEL+HKI+  CLDITE REVEE +EQL  LVP WISK
Subjt:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK

A0A5D3BIY5 CDT1-like protein a

4.6e-13

58.21

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Query:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK
        ++++ ++ L + V  VY+IF+S+NC  ITKEEL+HKI+  CLDITE REVEE +EQL  LVP WISK
Subjt:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK

A0A6J1C9Y5 CDT1-like protein b

3.5e-29

98.51

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Query:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK
        VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWIS+
Subjt:  VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK

SwissProt top hits

e value

%identity

Alignment

Q9M1S9 CDT1-like protein b

3.9e-09

45.45

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Query:  TEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK
        TE    +L Q V+ ++ +F S N   ITKEEL++KI++  ++IT+ REVEE L  ++ LVP+WIS+
Subjt:  TEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK

Q9SJW9 CDT1-like protein a, chloroplastic

6.8e-06

44.07

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Query:  LSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK
        L +  + ++++ +SI    ITKEEL+HKI++   DIT+ +EVEE L  L  +VPEW+S+
Subjt:  LSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK

Arabidopsis top hits

e value

%identity

Alignment

AT2G31270.1 homolog of yeast CDT1 A

4.8e-07

44.07

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Query:  LSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK
        L +  + ++++ +SI    ITKEEL+HKI++   DIT+ +EVEE L  L  +VPEW+S+
Subjt:  LSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK

AT3G54710.1 homolog of yeast CDT1 B homolog of yeast CDT1 B

2.7e-10

45.45

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Query:  TEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK
        TE    +L Q V+ ++ +F S N   ITKEEL++KI++  ++IT+ REVEE L  ++ LVP+WIS+
Subjt:  TEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK

Sequences

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CDS sequence

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GTTACAGAGCAGTTTAACACCTCCTTGTCTCAGCGTGTTCACTGTGTTTACCATATTTTCCGATCTATAAATTGCCCCTTCATCACCAAGGAGGAGCTGATGCACAAGAT
ATTGTCTCGATGTCTTGACATCACAGAGAGCAGAGAAGTGGAAGAGCTGTTGGAGCAGCTTGTAAATCTGGTTCCTGAATGGATCTCGAAA

mRNA sequence

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Protein sequence

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VTEQFNTSLSQRVHCVYHIFRSINCPFITKEELMHKILSRCLDITESREVEELLEQLVNLVPEWISK

MS020108 (gene) of Bitter gourd (TR) v1 genome