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MS020173 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020173
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotransposon protein
Genome locationscaffold735:3069..3185
RNA-Seq ExpressionMS020173
SyntenyMS020173
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042271.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-0765.79Show/hide
Query:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVKVR
        ++A+AEM GP CSDFGWN+ +KCI   K+VF DWVKVR
Subjt:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVKVR
KAA0063337.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-0765.79Show/hide
Query:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVKVR
        ++A+AEM GPNCS FGWN+ +KCI   K+VF+DWVKVR
Subjt:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVKVR
XP_038886815.1 uncharacterized protein LOC120077046 [Benincasa hispida]4.1e-0875Show/hide
Query:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVK
        Y+AIAEMLGPN S FGWNE +KC  C KDVF+DWVK
Subjt:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVK
XP_038987004.1 uncharacterized protein At2g29880-like [Phoenix dactylifera]2.0e-0766.67Show/hide
Query:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVK
        YNAIAEMLGPNCS FGW++  KC+ C +D F +WVK
Subjt:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVK
XP_038989774.1 uncharacterized protein LOC120113090 [Phoenix dactylifera]2.0e-0766.67Show/hide
Query:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVK
        YNAIAEMLGPNCS FGW++  KC+ C +D F +WVK
Subjt:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVK
TrEMBL top hitse value%identityAlignment
A0A5A7SJZ2 Retrotransposon protein1.7e-0765.79Show/hide
Query:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVKVR
        ++A+AEM GPNCS FGWN+ +KCI   K+VF+DWVKVR
Subjt:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVKVR
A0A5A7TL11 Retrotransposon protein9.8e-0865.79Show/hide
Query:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVKVR
        ++A+AEM GP CSDFGWN+ +KCI   K+VF DWVKVR
Subjt:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVKVR
A0A5A7V8K9 Retrotransposon protein9.8e-0865.79Show/hide
Query:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVKVR
        ++A+AEM GPNCS FGWN+ +KCI   K+VF+DWVKVR
Subjt:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVKVR
A0A5D3C542 Retrotransposon protein2.9e-0769.44Show/hide
Query:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVK
        Y AIAEM+GP CS FGWNE  KCI+  K VF+DWVK
Subjt:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVK
A0A5D3DTP5 Retrotransposon protein2.9e-0763.16Show/hide
Query:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVKVR
        ++A+AEM GP CSDFGWN+ +KCI   K+VF DW KVR
Subjt:  YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVKVR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATAACGCAATTGCAGAAATGTTAGGGCCAAATTGTAGTGATTTTGGTTGGAATGAACCAGAAAAGTGTATTGATTGTTTGAAAGATGTATTTAATGATTGGGTCAAGGT
ACGTAAT
mRNA sequenceShow/hide mRNA sequence
TATAACGCAATTGCAGAAATGTTAGGGCCAAATTGTAGTGATTTTGGTTGGAATGAACCAGAAAAGTGTATTGATTGTTTGAAAGATGTATTTAATGATTGGGTCAAGGT
ACGTAAT
Protein sequenceShow/hide protein sequence
YNAIAEMLGPNCSDFGWNEPEKCIDCLKDVFNDWVKVRN