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MS020176 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020176
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionarabinogalactan protein 23
Genome locationscaffold735:24940..25179
RNA-Seq ExpressionMS020176
SyntenyMS020176
Gene Ontology termsNA
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035760.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa]7.1e-0757.5Show/hide
Query:  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATLPGVGALIGASAASLIAYCLQ
        MEMK  A AA +A  ASLSMVLA++                  EA SPAPGP+S  SATLP VG L+GASAASLIAYCLQ
Subjt:  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATLPGVGALIGASAASLIAYCLQ
KAE8649766.1 hypothetical protein Csa_011936, partial [Cucumis sativus]1.3e-0558.11Show/hide
Query:  ALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATLPGVGALIGASAASLIAYCLQ
        A AA +  AASLSMVLA++                  EA SPAPGP+SA+SATLP VG L+GASAASLIAYCLQ
Subjt:  ALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATLPGVGALIGASAASLIAYCLQ
TrEMBL top hitse value%identityAlignment
A0A0D2QHJ2 Uncharacterized protein (Fragment)6.1e-0449.38Show/hide
Query:  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGP-TSASSATLPGVGALIGASAASLIAYCLQ
        M+MKKI+ A +VA AAS+S V+AA    SPAP   PGA  A+  A + APGP +S + +T+P +G+L+GA+  S  AY LQ
Subjt:  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGP-TSASSATLPGVGALIGASAASLIAYCLQ
A0A5D2DTG9 Uncharacterized protein (Fragment)6.1e-0449.38Show/hide
Query:  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGP-TSASSATLPGVGALIGASAASLIAYCLQ
        M+MKKI+ A +VA AAS+S V+AA    SPAP   PGA  A+  A + APGP +S + +T+P +G+L+GA+  S  AY LQ
Subjt:  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGP-TSASSATLPGVGALIGASAASLIAYCLQ
A0A5D3E271 Arabinogalactan peptide 23-like3.4e-0757.5Show/hide
Query:  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATLPGVGALIGASAASLIAYCLQ
        MEMK  A AA +A  ASLSMVLA++                  EA SPAPGP+S  SATLP VG L+GASAASLIAYCLQ
Subjt:  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATLPGVGALIGASAASLIAYCLQ
A0A5J5SRV1 Uncharacterized protein6.1e-0449.38Show/hide
Query:  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGP-TSASSATLPGVGALIGASAASLIAYCLQ
        M+MKKI+ A +VA AAS+S V+AA    SPAP   PGA  A+  A + APGP +S + +T+P +G+L+GA+  S  AY LQ
Subjt:  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGP-TSASSATLPGVGALIGASAASLIAYCLQ
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 233.1e-0546.84Show/hide
Query:  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATLPGVGALIGASAASLIAYCL
        MEMKKIA   L AAA+                     AV+AA+E G+PAPGP SA+SA LP +G+L+GAS  SL +Y L
Subjt:  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATLPGVGALIGASAASLIAYCL
Arabidopsis top hitse value%identityAlignment
AT3G57690.1 arabinogalactan protein 232.2e-0646.84Show/hide
Query:  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATLPGVGALIGASAASLIAYCL
        MEMKKIA   L AAA+                     AV+AA+E G+PAPGP SA+SA LP +G+L+GAS  SL +Y L
Subjt:  MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATLPGVGALIGASAASLIAYCL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGAAGATCGCCTTGGCTGCCTTAGTTGCTGCTGCTGCCTCCCTGAGCATGGTTTTGGCCGCCAACGAAGTGGTGTCCCCGGCACCCGGTGTGGTACCCGG
TGCGGTTTTGGCTGCCAAAGAAGCCGGGTCCCCGGCACCCGGCCCGACCAGCGCAAGTTCCGCTACCTTGCCCGGCGTCGGGGCTTTGATAGGTGCATCTGCTGCCTCTC
TTATTGCCTATTGCCTTCAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAAGAAGATCGCCTTGGCTGCCTTAGTTGCTGCTGCTGCCTCCCTGAGCATGGTTTTGGCCGCCAACGAAGTGGTGTCCCCGGCACCCGGTGTGGTACCCGG
TGCGGTTTTGGCTGCCAAAGAAGCCGGGTCCCCGGCACCCGGCCCGACCAGCGCAAGTTCCGCTACCTTGCCCGGCGTCGGGGCTTTGATAGGTGCATCTGCTGCCTCTC
TTATTGCCTATTGCCTTCAG
Protein sequenceShow/hide protein sequence
MEMKKIALAALVAAAASLSMVLAANEVVSPAPGVVPGAVLAAKEAGSPAPGPTSASSATLPGVGALIGASAASLIAYCLQ