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MS020188 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020188
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold735:239514..239846
RNA-Seq ExpressionMS020188
SyntenyMS020188
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY00433.1 Uncharacterized protein TCM_010295 [Theobroma cacao]1.3e-1135.14Show/hide
Query:  LWETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMC
        LW   +  K   FMWK  H+ +P+R  L K+G+ +  +CP C + +ET  H L   +  +L+W T       I++F+++I D L  + EVL+  E E   
Subjt:  LWETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMC

Query:  VTSWAIWNHRN
           WAIW  RN
Subjt:  VTSWAIWNHRN

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]2.8e-1745.45Show/hide
Query:  FMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMCVTSWAIWNHRN
        F+W+ F++C+PS  NL K+GI+  P C  C   +ETTDH L + K  K +W  L+ ++    DFNN++QD L+ L E LST +F+++ V  WAIWN RN
Subjt:  FMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMCVTSWAIWNHRN

XP_024636398.2 uncharacterized protein LOC112420872 [Medicago truncatula]3.0e-1130.97Show/hide
Query:  LWETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQ--DRLISLAEVLSTQEFEV
        +W  K+  KVKNF+W+A  +C+P+R+ L  KG++    C  C    E ++H+        L W  +   S ++A F+ N+     + ++ + L  Q+ ++
Subjt:  LWETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQ--DRLISLAEVLSTQEFEV

Query:  MCVTSWAIWNHRN
          VT W+IW HRN
Subjt:  MCVTSWAIWNHRN

XP_030478322.1 uncharacterized protein LOC115695396 [Cannabis sativa]2.3e-1134.23Show/hide
Query:  LWETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMC
        LW   +  K+K+F+W+AFH  +P  +NL  K     PLC  C    E+  H L      K +W +   K   ++ + ++I+D L+   +VL  QEF+V  
Subjt:  LWETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMC

Query:  VTSWAIWNHRN
           W IWN RN
Subjt:  VTSWAIWNHRN

XP_030486932.1 uncharacterized protein LOC115703841 [Cannabis sativa]1.1e-1034.82Show/hide
Query:  WETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKK--SNVIADFNNNIQDRLISLAEVLSTQEFEVM
        W+  + AKV +F WK FHE +P+   L K+ +     CP C  + +T  H +   +  + +W +L      NVI  FN + Q  ++   E+LS  EFE+ 
Subjt:  WETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKK--SNVIADFNNNIQDRLISLAEVLSTQEFEVM

Query:  CVTSWAIWNHRN
          TSW+IW  RN
Subjt:  CVTSWAIWNHRN

TrEMBL top hitse value%identityAlignment
A0A061E711 zf-RVT domain-containing protein6.4e-1235.14Show/hide
Query:  LWETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMC
        LW   +  K   FMWK  H+ +P+R  L K+G+ +  +CP C + +ET  H L   +  +L+W T       I++F+++I D L  + EVL+  E E   
Subjt:  LWETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMC

Query:  VTSWAIWNHRN
           WAIW  RN
Subjt:  VTSWAIWNHRN

A0A2N9FH97 Uncharacterized protein5.8e-1329.73Show/hide
Query:  LWETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMC
        +W  ++  KV++F+W+A HE +P+R NL+ + +   P+CP C    ETT H++      + +W ++     +  D  ++ Q+ L++  + LS  E ++  
Subjt:  LWETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMC

Query:  VTSWAIWNHRN
        + SW++W HRN
Subjt:  VTSWAIWNHRN

A0A2N9J4C9 Uncharacterized protein2.2e-1234.55Show/hide
Query:  WETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMCV
        W  K+ AKV++F+W+A HE +P+R+NL+ + +   P C  C  T ET  H L + K+ + +W ++     +I +   N  +       VLST E ++  +
Subjt:  WETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMCV

Query:  TSWAIWNHRN
        T+WAIW  RN
Subjt:  TSWAIWNHRN

A0A2N9J809 Uncharacterized protein2.2e-1234.55Show/hide
Query:  WETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMCV
        W  K+ AKV++F+W+A HE +P+R+NL+ + +   P C  C  T ET  H L + K+ + +W ++     +I +   N  +       VLST E ++  +
Subjt:  WETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMCV

Query:  TSWAIWNHRN
        T+WAIW  RN
Subjt:  TSWAIWNHRN

A0A6J1CTE3 uncharacterized protein LOC1110145781.3e-1745.45Show/hide
Query:  FMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMCVTSWAIWNHRN
        F+W+ F++C+PS  NL K+GI+  P C  C   +ETTDH L + K  K +W  L+ ++    DFNN++QD L+ L E LST +F+++ V  WAIWN RN
Subjt:  FMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMCVTSWAIWNHRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G26855.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.2e-0537.74Show/hide
Query:  LWETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVL
        +W  KIS K+K  +WKA +  +P    L  + I + P C  CR   ET  H+L
Subjt:  LWETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTATGGGAAACAAAAATCTCAGCTAAGGTAAAAAATTTTATGTGGAAAGCTTTCCATGAATGTATACCATCTCGTGTGAACTTAAACAAGAAAGGTATTGAGCTCTTACC
TCTATGTCCAGAGTGCAGGTTGACGCTTGAAACAACAGATCATGTGCTCTCCCGCCCTAAAAACTTCAAATTGTTATGGCCAACTCTCATTAAGAAATCAAATGTCATTG
CTGATTTCAATAATAACATCCAAGATCGTTTGATTTCTCTCGCTGAGGTTCTCTCTACACAAGAGTTTGAAGTTATGTGTGTTACTAGTTGGGCAATATGGAATCATAGG
AAT
mRNA sequenceShow/hide mRNA sequence
TTATGGGAAACAAAAATCTCAGCTAAGGTAAAAAATTTTATGTGGAAAGCTTTCCATGAATGTATACCATCTCGTGTGAACTTAAACAAGAAAGGTATTGAGCTCTTACC
TCTATGTCCAGAGTGCAGGTTGACGCTTGAAACAACAGATCATGTGCTCTCCCGCCCTAAAAACTTCAAATTGTTATGGCCAACTCTCATTAAGAAATCAAATGTCATTG
CTGATTTCAATAATAACATCCAAGATCGTTTGATTTCTCTCGCTGAGGTTCTCTCTACACAAGAGTTTGAAGTTATGTGTGTTACTAGTTGGGCAATATGGAATCATAGG
AAT
Protein sequenceShow/hide protein sequence
LWETKISAKVKNFMWKAFHECIPSRVNLNKKGIELLPLCPECRLTLETTDHVLSRPKNFKLLWPTLIKKSNVIADFNNNIQDRLISLAEVLSTQEFEVMCVTSWAIWNHR
N