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MS020200 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020200
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING/U-box superfamily protein
Genome locationscaffold735:425448..425912
RNA-Seq ExpressionMS020200
SyntenyMS020200
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR024766 - Zinc finger, RING-H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595648.1 hypothetical protein SDJN03_12201, partial [Cucurbita argyrosperma subsp. sororia]3.4e-2138.46Show/hide
Query:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWN-----AEESMILDEVPAPEPAPEFVEEEEGGELGD
        Y+  +LS L++       +A  I ++   +  GN E     V  +DYI++   + +     + W+      EE+ IL+E     P  E V EE G E+GD
Subjt:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWN-----AEESMILDEVPAPEPAPEFVEEEEGGELGD

Query:  CSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPI
        CSIC EEL  +G+ GNG G K+ +V+++ CGHVYH+SCI  WL + +SCPLCR P+
Subjt:  CSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPI

KAG6595650.1 hypothetical protein SDJN03_12203, partial [Cucurbita argyrosperma subsp. sororia]2.2e-2037.82Show/hide
Query:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWN-----AEESMILDEVPAPEPAPEFVEEEEGGELGD
        Y+  +LS L++       +A  I ++   +  GN E     V  +DYI++   + +     + W+      EE+ IL+E     P  E V EE G E+GD
Subjt:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWN-----AEESMILDEVPAPEPAPEFVEEEEGGELGD

Query:  CSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPI
        CSIC EEL  +G+ G G G K+ +V+++ CGHVYH+SCI  WL + +SCPLCR P+
Subjt:  CSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPI

XP_016899530.1 PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo]1.2e-2138.51Show/hide
Query:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVP-------APEPAPEFVEEEEGGEL
        Y+   LSSL++ PAAS ++AR IA+ +  +   N + +  ++A VD+I++     + + QS    AEE+++ DE P                 EE+  +L
Subjt:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVP-------APEPAPEFVEEEEGGEL

Query:  GDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITLK
        GDCSIC +EL  +          K +V++I CGHVYH+SCI  WL N NSCPLCR P+ LK
Subjt:  GDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITLK

XP_022151639.1 uncharacterized protein LOC111019546 [Momordica charantia]9.9e-8298.71Show/hide
Query:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVPAPEPAPEFVEEEEGGELGDCSICF
        YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNA+ESMILDEVPAPEPAPEFVEEE GGELGDCSICF
Subjt:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVPAPEPAPEFVEEEEGGELGDCSICF

Query:  EELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITLKF
        EELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITLKF
Subjt:  EELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITLKF

XP_023518048.1 uncharacterized protein LOC111781594 [Cucurbita pepo subsp. pepo]9.8e-2138.46Show/hide
Query:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWN-----AEESMILDEVPAPEPAPEFVEEEEGGELGD
        Y+  +LS L++   A  A+A  I ++   +  GN E     V  +D+I++   + +     + W+      EE++IL+E     P  E V EE G E+GD
Subjt:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWN-----AEESMILDEVPAPEPAPEFVEEEEGGELGD

Query:  CSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPI
        CSIC EEL      GNG G K+ +V+++ CGHVYH+SCI  WL + +SCPLCR P+
Subjt:  CSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPI

TrEMBL top hitse value%identityAlignment
A0A0A0K2W2 RING-type domain-containing protein1.4e-2039.24Show/hide
Query:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVP-------APEPAPEFVEEEEGGEL
        Y+  ILSSL++ PAAS  +AR IA+ +  +   N+E +  ++A VD+I++   +           AEE+++LDE P                 EE+  EL
Subjt:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVP-------APEPAPEFVEEEEGGEL

Query:  GDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPI
        GDCSIC +EL  +          K +V++I CGHVYH+SCI  WL N NSCPLCR P+
Subjt:  GDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPI

A0A0A0K696 RING-type domain-containing protein1.4e-2039.24Show/hide
Query:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVP-------APEPAPEFVEEEEGGEL
        Y+  ILSSL++ PAAS  +AR IA+ +  +   N+E +  ++A VD+I++   +           AEE+++LDE P                 EE+  EL
Subjt:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVP-------APEPAPEFVEEEEGGEL

Query:  GDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPI
        GDCSIC +EL  +          K +V++I CGHVYH+SCI  WL N NSCPLCR P+
Subjt:  GDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPI

A0A1S4DUZ4 E3 ubiquitin-protein ligase RNF181-like5.6e-2238.51Show/hide
Query:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVP-------APEPAPEFVEEEEGGEL
        Y+   LSSL++ PAAS ++AR IA+ +  +   N + +  ++A VD+I++     + + QS    AEE+++ DE P                 EE+  +L
Subjt:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVP-------APEPAPEFVEEEEGGEL

Query:  GDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITLK
        GDCSIC +EL  +          K +V++I CGHVYH+SCI  WL N NSCPLCR P+ LK
Subjt:  GDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITLK

A0A5D3E1S5 E3 ubiquitin-protein ligase RNF181-like protein5.6e-2238.51Show/hide
Query:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVP-------APEPAPEFVEEEEGGEL
        Y+   LSSL++ PAAS ++AR IA+ +  +   N + +  ++A VD+I++     + + QS    AEE+++ DE P                 EE+  +L
Subjt:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVP-------APEPAPEFVEEEEGGEL

Query:  GDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITLK
        GDCSIC +EL  +          K +V++I CGHVYH+SCI  WL N NSCPLCR P+ LK
Subjt:  GDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITLK

A0A6J1DDM9 uncharacterized protein LOC1110195464.8e-8298.71Show/hide
Query:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVPAPEPAPEFVEEEEGGELGDCSICF
        YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNA+ESMILDEVPAPEPAPEFVEEE GGELGDCSICF
Subjt:  YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVPAPEPAPEFVEEEEGGELGDCSICF

Query:  EELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITLKF
        EELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITLKF
Subjt:  EELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITLKF

SwissProt top hitse value%identityAlignment
P90990 E3 ubiquitin-protein ligase trul-19.9e-0841.38Show/hide
Query:  GDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPI
        G CSICFE+LK           + +K+  I CGH+YH  CI  W+  K  CP CR  +
Subjt:  GDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPI

Q08109 ERAD-associated E3 ubiquitin-protein ligase HRD12.1e-0535.71Show/hide
Query:  CSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPI
        C IC +EL I          K  K  ++ CGH+ H SC+  W+    +CP+CR+P+
Subjt:  CSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPI

Q5DTZ6 RING finger protein 1502.1e-0534.33Show/hide
Query:  EEEEGGELGDCSICFEELKIDGHGGNGSGTKKNKVVKI-GCGHVYHKSCIITWLTNKNSCPLCRMPI
        ++E   +  +C++C E            G K N VV+I  C H++HKSC+  WL +  +CP+C+M I
Subjt:  EEEEGGELGDCSICFEELKIDGHGGNGSGTKKNKVVKI-GCGHVYHKSCIITWLTNKNSCPLCRMPI

Q9ULK6 RING finger protein 1502.1e-0534.33Show/hide
Query:  EEEEGGELGDCSICFEELKIDGHGGNGSGTKKNKVVKI-GCGHVYHKSCIITWLTNKNSCPLCRMPI
        ++E   +  +C++C E            G K N VV+I  C H++HKSC+  WL +  +CP+C+M I
Subjt:  EEEEGGELGDCSICFEELKIDGHGGNGSGTKKNKVVKI-GCGHVYHKSCIITWLTNKNSCPLCRMPI

Q9VE61 E3 ubiquitin-protein ligase RNF181 homolog4.1e-0630.91Show/hide
Query:  LRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVPAPEPAPEFVEEEEGGELGDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWL
        L+V+A+++ I + + V +         A +  IL+      P  E V+ +EGG+L +CS+C E  +           +  K   + C H +H+ CI+ WL
Subjt:  LRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVPAPEPAPEFVEEEEGGELGDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWL

Query:  TNKNSCPLCR
           NSCPLCR
Subjt:  TNKNSCPLCR

Arabidopsis top hitse value%identityAlignment
AT1G60360.1 RING/U-box superfamily protein1.6e-0829.17Show/hide
Query:  ESMILDEVPAPEPAPE----------FVEEEEGGELGDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITL
        E +  D+ P P PA E             +    ++  C++C EE  + G              ++ C H+YHK CI+ WL   NSCP+CR  + L
Subjt:  ESMILDEVPAPEPAPE----------FVEEEEGGELGDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITL

AT3G30460.1 RING/U-box superfamily protein4.5e-0840.79Show/hide
Query:  PAPEFVEEE--EGGELGDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITL
        P  EF  EE  E G L  C+IC EEL               ++ ++ C H YHK CI  WL+N+N+CPLCR  + L
Subjt:  PAPEFVEEE--EGGELGDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITL

AT4G05350.1 RING/U-box superfamily protein4.1e-0943.33Show/hide
Query:  ELGDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPI
        E   CSIC E L         SG K   V ++ C HV+H  C++ WL  KN+CPLCR  I
Subjt:  ELGDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPI

AT4G12140.1 RING/U-box superfamily protein1.3e-0736.84Show/hide
Query:  ELGDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCR
        E   CSIC + L           + K    ++ C HV+H SC++ WL  KN+CP+CR
Subjt:  ELGDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCR

AT4G12190.1 RING/U-box superfamily protein9.2e-0942.11Show/hide
Query:  ELGDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCR
        E   CSIC E L         SG K   + ++ C HV+H  C++ WL  KN+CPLCR
Subjt:  ELGDCSICFEELKIDGHGGNGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TACCTGCTCTGGATTCTGTCCTCCCTCGACCTCCCCCCCGCCGCCTCCCACGCCGTCGCTCGGAACATCGCCGCCTTCGTGACCCACTTGACCCGCGGGAACGCCGAGGT
CGACTTACGCGTCGTCGCCGTCGTCGATTACATTCAGATCGCGGTTTCGGTGGGGCAGAGGCAGAGGCAGAGTCGGAGTTGGAACGCCGAGGAGAGTATGATTCTCGATG
AAGTTCCGGCGCCGGAGCCGGCGCCGGAGTTTGTAGAAGAAGAAGAAGGAGGAGAATTGGGAGATTGCAGCATTTGTTTTGAGGAACTAAAAATTGACGGCCATGGCGGA
AACGGGAGCGGGACGAAGAAGAATAAGGTGGTTAAGATTGGGTGTGGTCATGTGTACCACAAATCCTGCATCATCACTTGGCTTACTAACAAAAATTCATGCCCATTGTG
TAGAATGCCCATTACTTTGAAGTTT
mRNA sequenceShow/hide mRNA sequence
TACCTGCTCTGGATTCTGTCCTCCCTCGACCTCCCCCCCGCCGCCTCCCACGCCGTCGCTCGGAACATCGCCGCCTTCGTGACCCACTTGACCCGCGGGAACGCCGAGGT
CGACTTACGCGTCGTCGCCGTCGTCGATTACATTCAGATCGCGGTTTCGGTGGGGCAGAGGCAGAGGCAGAGTCGGAGTTGGAACGCCGAGGAGAGTATGATTCTCGATG
AAGTTCCGGCGCCGGAGCCGGCGCCGGAGTTTGTAGAAGAAGAAGAAGGAGGAGAATTGGGAGATTGCAGCATTTGTTTTGAGGAACTAAAAATTGACGGCCATGGCGGA
AACGGGAGCGGGACGAAGAAGAATAAGGTGGTTAAGATTGGGTGTGGTCATGTGTACCACAAATCCTGCATCATCACTTGGCTTACTAACAAAAATTCATGCCCATTGTG
TAGAATGCCCATTACTTTGAAGTTT
Protein sequenceShow/hide protein sequence
YLLWILSSLDLPPAASHAVARNIAAFVTHLTRGNAEVDLRVVAVVDYIQIAVSVGQRQRQSRSWNAEESMILDEVPAPEPAPEFVEEEEGGELGDCSICFEELKIDGHGG
NGSGTKKNKVVKIGCGHVYHKSCIITWLTNKNSCPLCRMPITLKF