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MS020209 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020209
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold665:70386..70574
RNA-Seq ExpressionMS020209
SyntenyMS020209
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0034645 - cellular macromolecule biosynthetic process (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004386 - helicase activity (molecular function)
GO:0016893 - endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters (molecular function)
GO:0140097 - catalytic activity, acting on DNA (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4269469.1 unnamed protein product [Prunus armeniaca]7.0e-1045.16Show/hide
Query:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
        W++Q+P K++ FVWR C + L  + NL  R VDV NTC  CG +GE  +HIF+ C+     W
Subjt:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
CAB4273082.1 unnamed protein product [Prunus armeniaca]7.0e-1043.55Show/hide
Query:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
        W +Q+P KI+ F+W+ C + L  ++NLL RG+DV  +CA CG +GE  +H+F+ C+    LW
Subjt:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
CAB4299175.1 unnamed protein product [Prunus armeniaca]4.1e-1046.77Show/hide
Query:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
        W++Q+P KI+ FVWR C + L  + NL  R VDV NTC  CG +GE  +HIF+ C+     W
Subjt:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
XP_022143319.1 uncharacterized protein LOC111013220 [Momordica charantia]2.6e-1262.5Show/hide
Query:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCK
        W++ LPSKIK F WR CLD+L T  NL+ RGVDV +  AFCG KGE  LH+FW CK
Subjt:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCK
XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]1.6e-1457.14Show/hide
Query:  FWKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
        FWKM +P+KIK F+WRLCLD+L T  NL  RGV+++N C FCG  GE ++H+FW CK    LW
Subjt:  FWKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
TrEMBL top hitse value%identityAlignment
A0A6J1CNZ5 uncharacterized protein LOC1110132201.3e-1262.5Show/hide
Query:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCK
        W++ LPSKIK F WR CLD+L T  NL+ RGVDV +  AFCG KGE  LH+FW CK
Subjt:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCK
A0A6J1DAR4 uncharacterized protein LOC1110189547.8e-1557.14Show/hide
Query:  FWKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
        FWKM +P+KIK F+WRLCLD+L T  NL  RGV+++N C FCG  GE ++H+FW CK    LW
Subjt:  FWKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
A0A6J5U034 Reverse transcriptase domain-containing protein3.4e-1045.16Show/hide
Query:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
        W++Q+P K++ FVWR C + L  + NL  R VDV NTC  CG +GE  +HIF+ C+     W
Subjt:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
A0A6J5UAY2 Reverse transcriptase domain-containing protein3.4e-1043.55Show/hide
Query:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
        W +Q+P KI+ F+W+ C + L  ++NLL RG+DV  +CA CG +GE  +H+F+ C+    LW
Subjt:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
A0A6J5WGH5 Uncharacterized protein2.0e-1046.77Show/hide
Query:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
        W++Q+P KI+ FVWR C + L  + NL  R VDV NTC  CG +GE  +HIF+ C+     W
Subjt:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657506.0e-0427.42Show/hide
Query:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
        WK+++P ++K F+W +    ++T +    R +  SN C  C    E  LH+   C     +W
Subjt:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
Arabidopsis top hitse value%identityAlignment
AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.7e-0425.81Show/hide
Query:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW
        W  +   +     W   L++L TRD L G G+++ ++   C    E   H+F+ C     +W
Subjt:  WKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTGGAAGATGCAATTGCCCAGTAAAATTAAATTCTTTGTGTGGCGGCTTTGTCTTGATCAGCTGCTTACAAGGGATAATTTATTGGGTCGTGGTGTAGATGTGTCGAA
CACTTGTGCCTTTTGCGGAGTGAAAGGCGAGCCTACTCTTCATATTTTCTGGCATTGCAAGAAAGTCTGCCGTCTCTGG
mRNA sequenceShow/hide mRNA sequence
TTTTGGAAGATGCAATTGCCCAGTAAAATTAAATTCTTTGTGTGGCGGCTTTGTCTTGATCAGCTGCTTACAAGGGATAATTTATTGGGTCGTGGTGTAGATGTGTCGAA
CACTTGTGCCTTTTGCGGAGTGAAAGGCGAGCCTACTCTTCATATTTTCTGGCATTGCAAGAAAGTCTGCCGTCTCTGG
Protein sequenceShow/hide protein sequence
FWKMQLPSKIKFFVWRLCLDQLLTRDNLLGRGVDVSNTCAFCGVKGEPTLHIFWHCKKVCRLW