CuGenDBv2

Gene ID	MS020216
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	zf-RVT domain-containing protein
Genome location	scaffold665:142873..143216
RNA-Seq Expression	MS020216
Synteny	MS020216
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

RVW15110.1 Copia protein [Vitis vinifera]

6.5e-06

31.25

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Query:  CSLYLNASKGMHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMI--CGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAKSKYWREVFELAKF
        C L     + +  L  HC  T  +W  L  I G +W+ P SL+  LV      G+  + K   ++    LI W  W ERNN +F  K +  + V++L +F
Subjt:  CSLYLNASKGMHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMI--CGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAKSKYWREVFELAKF

Query:  HISFWFSIDKEF
        + S W S  + F
Subjt:  HISFWFSIDKEF

RVW96953.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

1.1e-05

31.25

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Query:  CSLYLNASKGMHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMI--CGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAKSKYWREVFELAKF
        C L     + +  L  HC  T  +W  L  I G +W+ P SL+  LV      G+  + K   ++    LI W  W ERNN +F  K +    V++L +F
Subjt:  CSLYLNASKGMHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMI--CGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAKSKYWREVFELAKF

Query:  HISFWFSIDKEF
        + S W S  + F
Subjt:  HISFWFSIDKEF

XP_028060524.1 uncharacterized protein LOC114264116 [Camellia sinensis]

5.0e-06

31.37

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Query:  LVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMICGHHFKNKKKLRVKATKL-ILWSNWLERNNGLFNAKSKYWREVFELAKFHISFWFSIDKEFSN
        L+ HC F   +W  +    GS WV P SL  +L+    G  +K+  KL  +A  L ++WS W+ RNN +FN+ +  W  + +  K  ++ W        +
Subjt:  LVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMICGHHFKNKKKLRVKATKL-ILWSNWLERNNGLFNAKSKYWREVFELAKFHISFWFSIDKEFSN

Query:  YT
        YT
Subjt:  YT

XP_028076616.1 uncharacterized protein LOC114278710 [Camellia sinensis]

2.7e-07

33.33

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Query:  LVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMICGHHFKNKKKLRVKATKL-ILWSNWLERNNGLFNAKSKYWREVFELAKFHISFWFSIDKEFSN
        L+ HC+F   +W  +    GS WV P SL  +L+    G  +KN  KL  +   L ++WS W+ RNN +FN+K   W  + +  K  ++ W        N
Subjt:  LVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMICGHHFKNKKKLRVKATKL-ILWSNWLERNNGLFNAKSKYWREVFELAKFHISFWFSIDKEFSN

Query:  YT
        YT
Subjt:  YT

XP_028108106.1 uncharacterized protein LOC114306978 [Camellia sinensis]

1.2e-07

34.34

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Query:  HCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMICGHHFKNKKKLRVKATKL-ILWSNWLERNNGLFNAKSKYWREVFELAKFHISFWFSIDKEFSNYT
        HC+FT  +W  +    GS WV P SL  +L+    G  +KN  KL  +   L ++WS W+ RNN +FN+K   W  + +  K  ++ W        NYT
Subjt:  HCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMICGHHFKNKKKLRVKATKL-ILWSNWLERNNGLFNAKSKYWREVFELAKFHISFWFSIDKEFSNYT

TrEMBL top hits

e value

%identity

Alignment

A0A438BW88 Copia protein

3.2e-06

31.25

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Query:  CSLYLNASKGMHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMI--CGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAKSKYWREVFELAKF
        C L     + +  L  HC  T  +W  L  I G +W+ P SL+  LV      G+  + K   ++    LI W  W ERNN +F  K +  + V++L +F
Subjt:  CSLYLNASKGMHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMI--CGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAKSKYWREVFELAKF

Query:  HISFWFSIDKEF
        + S W S  + F
Subjt:  HISFWFSIDKEF

A0A438IJT2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.4e-06

31.25

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Query:  CSLYLNASKGMHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMI--CGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAKSKYWREVFELAKF
        C L     + +  L  HC  T  +W  L  I G +W+ P SL+  LV      G+  + K   ++    LI W  W ERNN +F  K +    V++L +F
Subjt:  CSLYLNASKGMHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMI--CGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAKSKYWREVFELAKF

Query:  HISFWFSIDKEF
        + S W S  + F
Subjt:  HISFWFSIDKEF

A0A438JCR4 Putative ribonuclease H protein

7.1e-06

32.14

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Query:  CSLYLNASKGMHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMI--CGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAKSKYWREVFELAKF
        C L     + +  L  HC  T  +W  L  + G  WV P SL+  LV      G+  + K   ++    LI W  W ERNN +F  K K    V++L +F
Subjt:  CSLYLNASKGMHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMI--CGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAKSKYWREVFELAKF

Query:  HISFWFSIDKEF
        + S W S  + F
Subjt:  HISFWFSIDKEF

A0A438K969 Putative ribonuclease H protein

5.4e-06

32.14

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Query:  CSLYLNASKGMHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMI--CGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAKSKYWREVFELAKF
        C L     + +  L  HC  T  +W  L  + G  WV P SL+  LV      G+  + K   ++    LI W  W ERNN +F  K +    V++L +F
Subjt:  CSLYLNASKGMHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMI--CGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAKSKYWREVFELAKF

Query:  HISFWFSIDKEF
        + S W S  K F
Subjt:  HISFWFSIDKEF

A0A438KG54 Protein RETICULATA, chloroplastic

5.4e-06

31.25

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Query:  CSLYLNASKGMHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMI--CGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAKSKYWREVFELAKF
        C L     + +  L  HC  T  +W  L  + G SWV P S++  LV      G+  + K   ++    LI W  W ERNN +F  K +    V++L +F
Subjt:  CSLYLNASKGMHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMI--CGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAKSKYWREVFELAKF

Query:  HISFWFSIDKEF
        + S W S  + F
Subjt:  HISFWFSIDKEF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G02650.1 Ribonuclease H-like superfamily protein

1.6e-05

30.67

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Query:  MHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMICGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAK
        +H ++F+C +T+++W S + I G+ W  P S + NL ++I     +    L       I+W  W  RN  LF  K
Subjt:  MHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMICGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAK

Sequences

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CDS sequence

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TGTTCTCTTTATTTGAATGCATCTAAAGGAATGCACCGTCTCGTTTTCCATTGCTCCTTTACTAAGAATATTTGGGTTTCTCTTTCACAAATTTCTGGATCATCTTGGGT
TCATCCTCATTCTTTGGACGGAAATTTGGTTCAAATGATATGCGGACACCATTTTAAGAATAAAAAGAAACTTCGGGTCAAAGCCACTAAGTTGATACTTTGGAGTAATT
GGTTGGAAAGAAATAATGGACTTTTCAATGCGAAAAGTAAATATTGGAGGGAGGTTTTTGAGTTAGCAAAGTTCCATATATCTTTTTGGTTTTCTATTGATAAAGAGTTT
AGTAATTATACT

mRNA sequence

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Protein sequence

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CSLYLNASKGMHRLVFHCSFTKNIWVSLSQISGSSWVHPHSLDGNLVQMICGHHFKNKKKLRVKATKLILWSNWLERNNGLFNAKSKYWREVFELAKFHISFWFSIDKEF
SNYT

MS020216 (gene) of Bitter gourd (TR) v1 genome