; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS020219 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020219
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold665:157941..158158
RNA-Seq ExpressionMS020219
SyntenyMS020219
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW15109.1 putative ribonuclease H protein [Vitis vinifera]1.8e-0952Show/hide
Query:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWKD-YL---GRLTLTNAVLSSIPLYCFSVFLCPKSII
        CK  EW L YLGL LGGN K   FWD V E++S +L  WK  YL   GR+TL  + LS IP Y  S+F  P SI+
Subjt:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWKD-YL---GRLTLTNAVLSSIPLYCFSVFLCPKSII
XP_020420593.1 uncharacterized protein LOC18774736 [Prunus persica]1.0e-0950.7Show/hide
Query:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWK----DYLGRLTLTNAVLSSIPLYCFSVFLCP
        C+ G W + YLGL LGGN +   FWD V EKV ++L KWK       GRLT+  AVL SIP+Y  S+F  P
Subjt:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWK----DYLGRLTLTNAVLSSIPLYCFSVFLCP
XP_021971076.1 uncharacterized protein LOC110866029 [Helianthus annuus]3.6e-1048Show/hide
Query:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWK----DYLGRLTLTNAVLSSIPLYCFSVFLCPKSII
        C+AG     YLG+ +G N+K   FW+ V E+VS++LSKWK     + GRLTL  +VL SIP Y  S+FL PK ++
Subjt:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWK----DYLGRLTLTNAVLSSIPLYCFSVFLCPKSII
XP_024982131.1 uncharacterized protein LOC112518597 [Cynara cardunculus var. scolymus]6.1e-1049.33Show/hide
Query:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWKDYL----GRLTLTNAVLSSIPLYCFSVFLCPKSII
        CKA  +   YLGL +GGN+K K+ W  VE+K   KLS WK       GR TL  +VLSSIPL+ FS+F  P S++
Subjt:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWKDYL----GRLTLTNAVLSSIPLYCFSVFLCPKSII
XP_035841406.1 uncharacterized protein LOC118488252 [Helianthus annuus]6.1e-1048Show/hide
Query:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWK----DYLGRLTLTNAVLSSIPLYCFSVFLCPKSII
        C+AG     YLG+++G N+K   FWD V  +V ++LSKWK     + GR+TL  +VL SIP Y  S+FL PK II
Subjt:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWK----DYLGRLTLTNAVLSSIPLYCFSVFLCPKSII
TrEMBL top hitse value%identityAlignment
A0A438BVW3 Putative ribonuclease H protein8.6e-1052Show/hide
Query:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWKD-YL---GRLTLTNAVLSSIPLYCFSVFLCPKSII
        CK  EW L YLGL LGGN K   FWD V E++S +L  WK  YL   GR+TL  + LS IP Y  S+F  P SI+
Subjt:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWKD-YL---GRLTLTNAVLSSIPLYCFSVFLCPKSII
M5W647 Reverse transcriptase domain-containing protein (Fragment)5.0e-1050.7Show/hide
Query:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWK----DYLGRLTLTNAVLSSIPLYCFSVFLCP
        C+ G W + YLGL LGGN +   FWD V EKV ++L KWK       GRLT+  AVL SIP+Y  S+F  P
Subjt:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWK----DYLGRLTLTNAVLSSIPLYCFSVFLCP
M5WJI4 zf-RVT domain-containing protein5.0e-1050.7Show/hide
Query:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWKDYL----GRLTLTNAVLSSIPLYCFSVFLCP
        C+ G W + YLGL LGGN +   FWD V EKV ++L KWK       GRLT+  AVL SIP+Y  S+F  P
Subjt:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWKDYL----GRLTLTNAVLSSIPLYCFSVFLCP
M5XTH8 zf-RVT domain-containing protein5.0e-1050.7Show/hide
Query:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWKDYL----GRLTLTNAVLSSIPLYCFSVFLCP
        C+ G W + YLGL LGGN +   FWD V EKV ++L KWK       GRLT+  AVL SIP+Y  S+F  P
Subjt:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWKDYL----GRLTLTNAVLSSIPLYCFSVFLCP
M5XUF8 Reverse transcriptase domain-containing protein (Fragment)2.3e-1052.11Show/hide
Query:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWKDYL----GRLTLTNAVLSSIPLYCFSVFLCP
        C+ G W + YLGL LGGN +   FWD V EKV ++L KWK       GRLT+  AVL SIP+Y  SVF  P
Subjt:  CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWKDYL----GRLTLTNAVLSSIPLYCFSVFLCP
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.4e-0444.44Show/hide
Query:  KSFWDTVEEKVSSKLSKWKD----YLGRLTLTNAVLSSIPLYCFSVFLCPKSII
        K  +  + E+VSS++S W++    + GRLTLT AVLSS+P++  S  L P+SI+
Subjt:  KSFWDTVEEKVSSKLSKWKD----YLGRLTLTNAVLSSIPLYCFSVFLCPKSII
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGTAAGGCAGGGGAATGGTCTTTGGAATATTTGGGATTAAGACTGGGAGGAAATCTTAAAGGAAAAAGCTTCTGGGATACTGTTGAAGAAAAAGTCAGCTCTAAGTTGTC
GAAATGGAAAGATTATTTAGGAAGACTAACTTTAACGAATGCAGTGTTGTCTAGCATTCCCCTCTACTGTTTCTCCGTTTTTCTTTGCCCCAAATCTATAATT
mRNA sequenceShow/hide mRNA sequence
TGTAAGGCAGGGGAATGGTCTTTGGAATATTTGGGATTAAGACTGGGAGGAAATCTTAAAGGAAAAAGCTTCTGGGATACTGTTGAAGAAAAAGTCAGCTCTAAGTTGTC
GAAATGGAAAGATTATTTAGGAAGACTAACTTTAACGAATGCAGTGTTGTCTAGCATTCCCCTCTACTGTTTCTCCGTTTTTCTTTGCCCCAAATCTATAATT
Protein sequenceShow/hide protein sequence
CKAGEWSLEYLGLRLGGNLKGKSFWDTVEEKVSSKLSKWKDYLGRLTLTNAVLSSIPLYCFSVFLCPKSII