; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS020221 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020221
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold665:158831..159232
RNA-Seq ExpressionMS020221
SyntenyMS020221
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2623078.1 ribonuclease H protein [Pyrus ussuriensis x Pyrus communis]1.4e-1234.13Show/hide
Query:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK
        +W SK+P KVKV +W++   + NTCD++Q++ P + I P     C  K+   + +F +   ++QLW K F +  +SW   K   C E     F      +
Subjt:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK

Query:  EALVIWQDVVSPTLWRIWSERNQRVF
        +A  +W  +VS   W IW ERN+R+F
Subjt:  EALVIWQDVVSPTLWRIWSERNQRVF

TQD85214.1 hypothetical protein C1H46_029232 [Malus baccata]3.8e-1337.3Show/hide
Query:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK
        +W SK P KVK+ +W +     NTCDK+QK+ P M + P     C  K+   + +F +   S+QLW K F +  +SW   K C    +T    +G   K 
Subjt:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK

Query:  EALVIWQDVVSPTLWRIWSERNQRVF
        +AL  W  +VS   W IW ERN+R+F
Subjt:  EALVIWQDVVSPTLWRIWSERNQRVF

TQD89699.1 hypothetical protein C1H46_024693 [Malus baccata]6.5e-1334.13Show/hide
Query:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK
        +W SK+P KVK+ +W++     NTCD++Q++ P M + P     C  K+   + +F +   S+QLW K F +   SW   K   C E     F     +K
Subjt:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK

Query:  EALVIWQDVVSPTLWRIWSERNQRVF
        ++ V+W  +V    W IW ERN+R+F
Subjt:  EALVIWQDVVSPTLWRIWSERNQRVF

TQE05898.1 hypothetical protein C1H46_008581 [Malus baccata]2.2e-1336.51Show/hide
Query:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK
        +W SK P KVK+ +W++     NTCDK+Q++ P M + P     C  K+   + +F +   S+QLW K F +  +SW   K C    +T    +G   K 
Subjt:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK

Query:  EALVIWQDVVSPTLWRIWSERNQRVF
        +AL  W  +VS   W IW ERN+R+F
Subjt:  EALVIWQDVVSPTLWRIWSERNQRVF

XP_028960603.1 uncharacterized protein LOC114825746 [Malus domestica]1.0e-1336.51Show/hide
Query:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK
        +W SK+P KVK+ +W+  + K NTCD++Q++ P + + PQ    C  K+   + +F +   ++QLW K F +   SW   K C    +T    +GS  K 
Subjt:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK

Query:  EALVIWQDVVSPTLWRIWSERNQRVF
        +AL  W  +VS   W IW ERN+R+F
Subjt:  EALVIWQDVVSPTLWRIWSERNQRVF

TrEMBL top hitse value%identityAlignment
A0A540LFH9 zf-RVT domain-containing protein1.8e-1337.3Show/hide
Query:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK
        +W SK P KVK+ +W +     NTCDK+QK+ P M + P     C  K+   + +F +   S+QLW K F +  +SW   K C    +T    +G   K 
Subjt:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK

Query:  EALVIWQDVVSPTLWRIWSERNQRVF
        +AL  W  +VS   W IW ERN+R+F
Subjt:  EALVIWQDVVSPTLWRIWSERNQRVF

A0A540LTR6 zf-RVT domain-containing protein3.1e-1334.13Show/hide
Query:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK
        +W SK+P KVK+ +W++     NTCD++Q++ P M + P     C  K+   + +F +   S+QLW K F +   SW   K   C E     F     +K
Subjt:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK

Query:  EALVIWQDVVSPTLWRIWSERNQRVF
        ++ V+W  +V    W IW ERN+R+F
Subjt:  EALVIWQDVVSPTLWRIWSERNQRVF

A0A540M4H0 zf-RVT domain-containing protein1.2e-1233.33Show/hide
Query:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK
        +W SK+P KVK+ +W++ + K NTCD++Q++   + + P     C  K+   + +F +   ++QLW K F +   SW   K   C E     F      +
Subjt:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK

Query:  EALVIWQDVVSPTLWRIWSERNQRVF
        +A V+W  +VS   W IW ERN+R+F
Subjt:  EALVIWQDVVSPTLWRIWSERNQRVF

A0A540N4B1 zf-RVT domain-containing protein1.1e-1336.51Show/hide
Query:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK
        +W SK P KVK+ +W++     NTCDK+Q++ P M + P     C  K+   + +F +   S+QLW K F +  +SW   K C    +T    +G   K 
Subjt:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK

Query:  EALVIWQDVVSPTLWRIWSERNQRVF
        +AL  W  +VS   W IW ERN+R+F
Subjt:  EALVIWQDVVSPTLWRIWSERNQRVF

A0A5N5H648 Ribonuclease H protein7.0e-1334.13Show/hide
Query:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK
        +W SK+P KVKV +W++   + NTCD++Q++ P + I P     C  K+   + +F +   ++QLW K F +  +SW   K   C E     F      +
Subjt:  MWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAI-PQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKK

Query:  EALVIWQDVVSPTLWRIWSERNQRVF
        +A  +W  +VS   W IW ERN+R+F
Subjt:  EALVIWQDVVSPTLWRIWSERNQRVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCTATATCTCCTGATCTGATCCATAGCATGTGGAGCTCTAAAATTCCCAAAAAGGTGAAGGTTTTCCTTTGGATTCTGTGCCAGGAAAAGTCAAACACTTGTGACAAGCT
GCAGAAACAAAAGCCAAATATGGCTATCCCTCAAGCTGGTGTGCCTTGTGGAAAAAAAGATTTGGAGTCTCACACCGTCTTTCCTTATTTTGTGAGTTCGTTGCAGCTGT
GGTCCAAAACTTTTTGGAAGTTTGGTTTGAGTTGGGGCTTCCGTAAGTATTGTACTTGTAAGGAGGCTACACTTCAGCTTTTCGTTGGCTCCCCGTTCAAAAAGGAAGCT
CTTGTTATTTGGCAAGACGTGGTATCACCTACCTTATGGAGGATTTGGTCTGAAAGGAATCAAAGGGTCTTC
mRNA sequenceShow/hide mRNA sequence
CCTATATCTCCTGATCTGATCCATAGCATGTGGAGCTCTAAAATTCCCAAAAAGGTGAAGGTTTTCCTTTGGATTCTGTGCCAGGAAAAGTCAAACACTTGTGACAAGCT
GCAGAAACAAAAGCCAAATATGGCTATCCCTCAAGCTGGTGTGCCTTGTGGAAAAAAAGATTTGGAGTCTCACACCGTCTTTCCTTATTTTGTGAGTTCGTTGCAGCTGT
GGTCCAAAACTTTTTGGAAGTTTGGTTTGAGTTGGGGCTTCCGTAAGTATTGTACTTGTAAGGAGGCTACACTTCAGCTTTTCGTTGGCTCCCCGTTCAAAAAGGAAGCT
CTTGTTATTTGGCAAGACGTGGTATCACCTACCTTATGGAGGATTTGGTCTGAAAGGAATCAAAGGGTCTTC
Protein sequenceShow/hide protein sequence
PISPDLIHSMWSSKIPKKVKVFLWILCQEKSNTCDKLQKQKPNMAIPQAGVPCGKKDLESHTVFPYFVSSLQLWSKTFWKFGLSWGFRKYCTCKEATLQLFVGSPFKKEA
LVIWQDVVSPTLWRIWSERNQRVF