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MS020249 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020249
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionnuclear transcription factor Y subunit B-4-like
Genome locationscaffold665:451156..451515
RNA-Seq ExpressionMS020249
SyntenyMS020249
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0048046 - apoplast (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0004565 - beta-galactosidase activity (molecular function)
GO:0030246 - carbohydrate binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590402.1 Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subsp. sororia]1.4e-3568.42Show/hide
Query:  MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK
        MG++N ++LQLP ANVGRLMKKI+PQ +KISKEAK TMQECATEFISFVTSEAAEKC+++NRRTLNG+DI WAFG+ GLDNYA+A+AKYLL YRD + + 
Subjt:  MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK

Query:  IHNKHCGFQQQGEH
           K     +Q +H
Subjt:  IHNKHCGFQQQGEH

XP_022145916.1 nuclear transcription factor Y subunit B-4-like [Momordica charantia]8.8e-6299.17Show/hide
Query:  MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK
        MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK
Subjt:  MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK

Query:  IHNKHCGFQQQGEHINHDDN
        IHNKHCGFQQQGEH NHDDN
Subjt:  IHNKHCGFQQQGEHINHDDN

XP_022961414.1 nuclear transcription factor Y subunit B-4-like [Cucurbita moschata]1.4e-3568.42Show/hide
Query:  MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK
        MG++N ++LQLP ANVGRLMKKI+PQ +KISKEAK TMQECATEFISFVTSEAAEKC+++NRRTLNG+DI WAFG+ GLDNYA+A+AKYLL YRD + + 
Subjt:  MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK

Query:  IHNKHCGFQQQGEH
           K     +Q +H
Subjt:  IHNKHCGFQQQGEH

XP_022968852.1 nuclear transcription factor Y subunit B-4-like [Cucurbita maxima]3.7e-3669.3Show/hide
Query:  MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK
        MG++N ++LQLP ANVGRLMKKI+PQ +KISKEAK TMQECATEFISFVTSEAAEKC+++NRRTLNG+DI WAFG+ GLDNYA+A+AKYLL YRD + + 
Subjt:  MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK

Query:  IHNKHCGFQQQGEH
           K    ++Q EH
Subjt:  IHNKHCGFQQQGEH

XP_038880507.1 nuclear transcription factor Y subunit B-4-like [Benincasa hispida]9.9e-3766.67Show/hide
Query:  DNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKIHN
        +NWE LQLP ANVGR+MKKI+PQ +KISKEAK+TMQECA+EFISFV SEAAEKC++ENRRTLNG+DI WA G+ GLDNYA+ +AKYLL +R+A+ +K  N
Subjt:  DNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKIHN

Query:  KHCGFQ---QQGEHINHDDN
        K   FQ   QQGE  ++D++
Subjt:  KHCGFQ---QQGEHINHDDN

TrEMBL top hitse value%identityAlignment
A0A1S3BQ87 Beta-galactosidase4.5e-3564.96Show/hide
Query:  DNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKIHN
        +NWE LQLP ANV R+MKKIIPQ  KISKEAK+TMQECA EFISFVTSEAA+KC+ ENRRTLNG+DIYWAFG+LGLDNYA+A++  LL +R+A+ +K  +
Subjt:  DNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKIHN

Query:  KHCGFQQQGEHINHDDN
        K   FQ     +   D+
Subjt:  KHCGFQQQGEHINHDDN

A0A5D3CFV4 Beta-galactosidase 15-like9.9e-3565.25Show/hide
Query:  DNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKIHN
        +NWE LQLP ANV R+MKKIIPQ  KISKEAK+TMQECA EFISFVTSEAA+KC+ ENRRTLNG+DIYWAFG+LGLDNYA+A++  LL +R+A+ +K  +
Subjt:  DNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKIHN

Query:  KHCGFQQQGEHI-NHDDN
        K   FQ     + +H+ N
Subjt:  KHCGFQQQGEHI-NHDDN

A0A6J1CXT8 nuclear transcription factor Y subunit B-4-like4.3e-6299.17Show/hide
Query:  MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK
        MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK
Subjt:  MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK

Query:  IHNKHCGFQQQGEHINHDDN
        IHNKHCGFQQQGEH NHDDN
Subjt:  IHNKHCGFQQQGEHINHDDN

A0A6J1HDY6 nuclear transcription factor Y subunit B-4-like6.9e-3668.42Show/hide
Query:  MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK
        MG++N ++LQLP ANVGRLMKKI+PQ +KISKEAK TMQECATEFISFVTSEAAEKC+++NRRTLNG+DI WAFG+ GLDNYA+A+AKYLL YRD + + 
Subjt:  MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK

Query:  IHNKHCGFQQQGEH
           K     +Q +H
Subjt:  IHNKHCGFQQQGEH

A0A6J1HUN8 nuclear transcription factor Y subunit B-4-like1.8e-3669.3Show/hide
Query:  MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK
        MG++N ++LQLP ANVGRLMKKI+PQ +KISKEAK TMQECATEFISFVTSEAAEKC+++NRRTLNG+DI WAFG+ GLDNYA+A+AKYLL YRD + + 
Subjt:  MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK

Query:  IHNKHCGFQQQGEH
           K    ++Q EH
Subjt:  IHNKHCGFQQQGEH

SwissProt top hitse value%identityAlignment
O04027 Nuclear transcription factor Y subunit B-42.2e-3168.42Show/hide
Query:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKI-HNK
        LP ANVGRLMK+I+P  +KISKEAKQT+QECATEFISFVT EA+EKC+RENR+T+NG+DI+WA   LGLDNYADA  ++L  YR+A+  +  HNK
Subjt:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKI-HNK

O23310 Nuclear transcription factor Y subunit B-36.4e-2352.22Show/hide
Query:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK
        LP ANV R+MKK +P  +KISK+AK+T+QEC +EFISF+T EA++KC RE R+T+NG+D+ WA   LG ++Y +    YL  YR+ +  K
Subjt:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK

O82248 Nuclear transcription factor Y subunit B-51.2e-2461.9Show/hide
Query:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYR
        LP ANVGR+MK I+P  +K+SKEAK+TMQEC +EFISFVT EA++KC++E R+T+NG+DI WA   LG D+YA    KYL  YR
Subjt:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYR

Q67XJ2 Nuclear transcription factor Y subunit B-102.9e-2354.02Show/hide
Query:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQ
        LP AN+ R+MK+ +P   KI+K+AK+TMQEC +EFISFVTSEA++KC RE R+T+NG+D+ WA   LG ++Y D    YL+ YR+ +
Subjt:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQ

Q9SIT9 Nuclear transcription factor Y subunit B-71.5e-2450.45Show/hide
Query:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKIHN----KHC
        LP ANVGR+MKK++P   KISK+AK+T+QEC +EFISFVT EA++KC RE R+T+NG+DI WA   LG ++Y      YL  YRD +  K+++    +  
Subjt:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKIHN----KHC

Query:  GFQQQGEHINH
          QQQ +  NH
Subjt:  GFQQQGEHINH

Arabidopsis top hitse value%identityAlignment
AT1G09030.1 nuclear factor Y, subunit B41.6e-3268.42Show/hide
Query:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKI-HNK
        LP ANVGRLMK+I+P  +KISKEAKQT+QECATEFISFVT EA+EKC+RENR+T+NG+DI+WA   LGLDNYADA  ++L  YR+A+  +  HNK
Subjt:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKI-HNK

AT2G13570.1 nuclear factor Y, subunit B71.1e-2550.45Show/hide
Query:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKIHN----KHC
        LP ANVGR+MKK++P   KISK+AK+T+QEC +EFISFVT EA++KC RE R+T+NG+DI WA   LG ++Y      YL  YRD +  K+++    +  
Subjt:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKIHN----KHC

Query:  GFQQQGEHINH
          QQQ +  NH
Subjt:  GFQQQGEHINH

AT2G47810.1 nuclear factor Y, subunit B58.3e-2661.9Show/hide
Query:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYR
        LP ANVGR+MK I+P  +K+SKEAK+TMQEC +EFISFVT EA++KC++E R+T+NG+DI WA   LG D+YA    KYL  YR
Subjt:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYR

AT3G53340.1 nuclear factor Y, subunit B102.1e-2454.02Show/hide
Query:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQ
        LP AN+ R+MK+ +P   KI+K+AK+TMQEC +EFISFVTSEA++KC RE R+T+NG+D+ WA   LG ++Y D    YL+ YR+ +
Subjt:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQ

AT4G14540.1 nuclear factor Y, subunit B34.6e-2452.22Show/hide
Query:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK
        LP ANV R+MKK +P  +KISK+AK+T+QEC +EFISF+T EA++KC RE R+T+NG+D+ WA   LG ++Y +    YL  YR+ +  K
Subjt:  LPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGACGACAATTGGGAAAAGCTTCAGCTGCCAAGTGCTAACGTTGGAAGATTGATGAAGAAGATAATTCCTCAAACGTCAAAGATTTCTAAAGAAGCCAAACAGAC
AATGCAAGAATGTGCAACAGAGTTCATCAGCTTCGTTACAAGTGAAGCTGCAGAAAAGTGTAACAGAGAGAATCGTAGAACTCTCAACGGAGAAGACATTTATTGGGCTT
TTGGTGCTCTTGGCTTGGATAACTATGCCGACGCTACCGCCAAGTACTTGCTCAACTACAGGGACGCCCAAACAATGAAGATTCATAACAAACATTGTGGATTTCAACAA
CAAGGAGAACATATCAACCATGACGACAAC
mRNA sequenceShow/hide mRNA sequence
ATGGGAGACGACAATTGGGAAAAGCTTCAGCTGCCAAGTGCTAACGTTGGAAGATTGATGAAGAAGATAATTCCTCAAACGTCAAAGATTTCTAAAGAAGCCAAACAGAC
AATGCAAGAATGTGCAACAGAGTTCATCAGCTTCGTTACAAGTGAAGCTGCAGAAAAGTGTAACAGAGAGAATCGTAGAACTCTCAACGGAGAAGACATTTATTGGGCTT
TTGGTGCTCTTGGCTTGGATAACTATGCCGACGCTACCGCCAAGTACTTGCTCAACTACAGGGACGCCCAAACAATGAAGATTCATAACAAACATTGTGGATTTCAACAA
CAAGGAGAACATATCAACCATGACGACAAC
Protein sequenceShow/hide protein sequence
MGDDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENRRTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKIHNKHCGFQQ
QGEHINHDDN