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MS020253 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020253
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold665:484019..484348
RNA-Seq ExpressionMS020253
SyntenyMS020253
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN67603.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Prunus dulcis]3.3e-1539.09Show/hide
Query:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR
        K+N +GS  G +  + A  +IR+S G+WIKGF  NL C  ++ AE W +   L L WN G R + VE DS +A  L+   T  +  +  +      +L R
Subjt:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR

Query:  DWMVSIHHIY
        DW  SI HIY
Subjt:  DWMVSIHHIY

PKI40487.1 hypothetical protein CRG98_039123 [Punica granatum]4.4e-1538.18Show/hide
Query:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR
        K+NTNG+  G   + GA  LIR+  G+W+ GF QN+  +T I AE W +   LELAW++G   L++E D E  C  +R+  N     K +   I  LL  
Subjt:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR

Query:  DWMVSIHHIY
        +W++   H+Y
Subjt:  DWMVSIHHIY

PKI41804.1 hypothetical protein CRG98_037804 [Punica granatum]2.8e-1439.09Show/hide
Query:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR
        K+NT+GS  G   L GA  +IR  DG+WI+GF  N+  +T ++AE W  L  L+ AW++G   +++E DSE   +++   + + A  K +   I +LL R
Subjt:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR

Query:  DWMVSIHHIY
        DW V I H Y
Subjt:  DWMVSIHHIY

PKI42247.1 hypothetical protein CRG98_037363 [Punica granatum]2.2e-1946.36Show/hide
Query:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR
        KLNT+G V G+  + GA  ++R S G WI GF Q+L  STV VAE W +L+ LELAWN  CR L++E DS     LV  + + +   +P+   I  LL R
Subjt:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR

Query:  DWMVSIHHIY
        DW V I H Y
Subjt:  DWMVSIHHIY

PKI49193.1 hypothetical protein CRG98_030411 [Punica granatum]2.2e-1436.36Show/hide
Query:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR
        KLNTN +  G   L GA  L+R+ +GKW+ GF  N+  +T ++AE WV+   ++++W +G R L+ E++SE    L+R+ +        I + I  LL+R
Subjt:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR

Query:  DWMVSIHHIY
        +W + I H Y
Subjt:  DWMVSIHHIY

TrEMBL top hitse value%identityAlignment
A0A2I0I918 RNase H domain-containing protein2.1e-1538.18Show/hide
Query:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR
        K+NTNG+  G   + GA  LIR+  G+W+ GF QN+  +T I AE W +   LELAW++G   L++E D E  C  +R+  N     K +   I  LL  
Subjt:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR

Query:  DWMVSIHHIY
        +W++   H+Y
Subjt:  DWMVSIHHIY

A0A2I0ICU2 RNase H domain-containing protein1.4e-1439.09Show/hide
Query:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR
        K+NT+GS  G   L GA  +IR  DG+WI+GF  N+  +T ++AE W  L  L+ AW++G   +++E DSE   +++   + + A  K +   I +LL R
Subjt:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR

Query:  DWMVSIHHIY
        DW V I H Y
Subjt:  DWMVSIHHIY

A0A2I0IE25 RNase H domain-containing protein1.1e-1946.36Show/hide
Query:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR
        KLNT+G V G+  + GA  ++R S G WI GF Q+L  STV VAE W +L+ LELAWN  CR L++E DS     LV  + + +   +P+   I  LL R
Subjt:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR

Query:  DWMVSIHHIY
        DW V I H Y
Subjt:  DWMVSIHHIY

A0A2I0IZL7 RNase H domain-containing protein1.0e-1436.36Show/hide
Query:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR
        KLNTN +  G   L GA  L+R+ +GKW+ GF  N+  +T ++AE WV+   ++++W +G R L+ E++SE    L+R+ +        I + I  LL+R
Subjt:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR

Query:  DWMVSIHHIY
        +W + I H Y
Subjt:  DWMVSIHHIY

A0A5H2XGQ0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.6e-1539.09Show/hide
Query:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR
        K+N +GS  G +  + A  +IR+S G+WIKGF  NL C  ++ AE W +   L L WN G R + VE DS +A  L+   T  +  +  +      +L R
Subjt:  KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSR

Query:  DWMVSIHHIY
        DW  SI HIY
Subjt:  DWMVSIHHIY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGCTGAACACAAATGGGTCTGTCCATGGGACCCTTGCTTTAGTCGGAGCTAGTCGCTTAATTAGAGAATCTGATGGGAAATGGATAAAGGGGTTCCAACAGAATCTAAG
CTGCTCAACAGTTATTGTTGCCGAGTTCTGGGTCATTCTTTCAAGATTAGAACTGGCTTGGAATGTGGGATGTAGAAATTTGATGGTAGAATCTGACTCGGAGTCGGCGT
GCATCTTAGTTCGAAACAGAACCAATTCCACAGCTATAATTAAACCAATCTGGACAAAGATTTCACAACTGTTGAGTAGGGATTGGATGGTATCGATCCATCACATTTAT
mRNA sequenceShow/hide mRNA sequence
AAGCTGAACACAAATGGGTCTGTCCATGGGACCCTTGCTTTAGTCGGAGCTAGTCGCTTAATTAGAGAATCTGATGGGAAATGGATAAAGGGGTTCCAACAGAATCTAAG
CTGCTCAACAGTTATTGTTGCCGAGTTCTGGGTCATTCTTTCAAGATTAGAACTGGCTTGGAATGTGGGATGTAGAAATTTGATGGTAGAATCTGACTCGGAGTCGGCGT
GCATCTTAGTTCGAAACAGAACCAATTCCACAGCTATAATTAAACCAATCTGGACAAAGATTTCACAACTGTTGAGTAGGGATTGGATGGTATCGATCCATCACATTTAT
Protein sequenceShow/hide protein sequence
KLNTNGSVHGTLALVGASRLIRESDGKWIKGFQQNLSCSTVIVAEFWVILSRLELAWNVGCRNLMVESDSESACILVRNRTNSTAIIKPIWTKISQLLSRDWMVSIHHIY