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MS020266 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS020266
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L18
Genome locationscaffold665:572313..572654
RNA-Seq ExpressionMS020266
SyntenyMS020266
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590442.1 hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia]1.3e-4995.61Show/hide
Query:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR+SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022145949.1 uncharacterized protein LOC111015286 [Momordica charantia]3.0e-51100Show/hide
Query:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022961444.1 uncharacterized protein LOC111462025 [Cucurbita moschata]1.6e-4995.61Show/hide
Query:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR+SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022968817.1 uncharacterized protein LOC111467940 [Cucurbita maxima]3.7e-4994.74Show/hide
Query:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEK LR+SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_023515963.1 uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]4.8e-4993.86Show/hide
Query:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRP R+TQYLKPY+LKMHFTNKYVSAQV+HS+TATVASAASSQEKALR+SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

TrEMBL top hitse value%identityAlignment
A0A5D3DYC1 50S ribosomal protein L182.0e-4892.11Show/hide
Query:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPP++P R+ QYLKPYVLKMHFTNK+VSAQV+HSETATVASAASSQEKALR+SMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1CWR7 uncharacterized protein LOC1110152861.5e-51100Show/hide
Query:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1HE21 uncharacterized protein LOC1114620258.0e-5095.61Show/hide
Query:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEKALR+SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1HZV8 uncharacterized protein LOC1114691424.0e-4992.98Show/hide
Query:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETAT+ASAASSQEKALR SMESTRDVAAA KIGKLLGERLLLKGIPAVCVHLKREQKYHGK+K
Subjt:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1I0R8 uncharacterized protein LOC1114679401.8e-4994.74Show/hide
Query:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVASAASSQEK LR+SMESTRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

SwissProt top hitse value%identityAlignment
A7MWH4 50S ribosomal protein L181.7e-0943.48Show/hide
Query:  LKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++V AQV+ +  + V +AAS+ EKA+R  ++ T +V AA  +GK + ER L KG+ AV       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

A8IAP8 50S ribosomal protein L181.3e-0942.39Show/hide
Query:  LKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T+K++ AQ++         AASS EK LR+S+++  DV AA  IGKL+ ER   KG+ AV V  +    YHG+VKA+ +  RE G++
Subjt:  LKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

B6EPU1 50S ribosomal protein L181.7e-0944.57Show/hide
Query:  LKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++  AQV+    + V +AAS+ EKA+R  + +T + AAA  IGKL+ ER + KGI  V       Q YHG+V A+ DS REAG+K
Subjt:  LKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

B7VLE1 50S ribosomal protein L181.3e-0942.39Show/hide
Query:  LKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++V AQV+ +  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+ +V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

P52863 50S ribosomal protein L187.8e-1043.48Show/hide
Query:  LKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T ++V AQV+ S  + V +AAS+ EKA+R  +++T +V AA  +GK + ER L KG+  V       Q YHG+V A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

Arabidopsis top hitse value%identityAlignment
AT1G08845.1 Ribosomal L18p/L5e family protein2.8e-0728.71Show/hide
Query:  RVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P+ L +  + ++VSA + H  T    + A +  K ++A + S  D+ A   IG++L ER     +       + + K+ GK++AVV S+ + G
Subjt:  RVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT1G08845.2 Ribosomal L18p/L5e family protein2.8e-0728.71Show/hide
Query:  RVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P+ L +  + ++VSA + H  T    + A +  K ++A + S  D+ A   IG++L ER     +       + + K+ GK++AVV S+ + G
Subjt:  RVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT3G20230.1 Ribosomal L18p/L5e family protein6.1e-1031.68Show/hide
Query:  RVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P++L + F+ K++ A+V+H  T+ V S A++  + +R ++ S  D  A   IGKL+ ER +   + AV    ++ ++  GK+  V+D+++E G
Subjt:  RVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT3G45020.1 Ribosomal L18p/L5e family protein4.5e-0531.53Show/hide
Query:  LKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTR--DVAAAAKIGKLLGERLLLKGIP-----AVCVHLKREQKYHG-----KVKAVV
        LK YVL++  + KY++A VV      + + AS+ E  ++ S+E  R  +  AAA +G++L  RL ++G+       +   +K+E +  G     KV AV+
Subjt:  LKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTR--DVAAAAKIGKLLGERLLLKGIP-----AVCVHLKREQKYHG-----KVKAVV

Query:  DSVREAGIKLL
        +S+R  G+ L+
Subjt:  DSVREAGIKLL

AT5G27820.1 Ribosomal L18p/L5e family protein2.7e-4276.32Show/hide
Query:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPP VRP R+  YLKPYVLKMHFTNK+V AQV+HS TATVA +ASSQEKALR +M+ TRDVAAA+KIGK+LGERLL+K IPAV + +K+EQ+YHGKVK
Subjt:  MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAG+KLL
Subjt:  AVVDSVREAGIKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTCCTCCTCCAGTTAGGCCAGCAAGAGTAACCCAATATCTGAAGCCATATGTGTTGAAGATGCACTTCACAAACAAGTACGTGAGCGCTCAGGTGGTCCACTC
GGAAACGGCCACGGTTGCTTCTGCTGCGAGCTCGCAGGAGAAGGCGCTGAGGGCGAGTATGGAGTCGACTAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAGTTGTTGG
GGGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTCCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTTAGGGAAGCAGGT
ATTAAGCTCCTT
mRNA sequenceShow/hide mRNA sequence
ATGGTGATTCCTCCTCCAGTTAGGCCAGCAAGAGTAACCCAATATCTGAAGCCATATGTGTTGAAGATGCACTTCACAAACAAGTACGTGAGCGCTCAGGTGGTCCACTC
GGAAACGGCCACGGTTGCTTCTGCTGCGAGCTCGCAGGAGAAGGCGCTGAGGGCGAGTATGGAGTCGACTAGGGATGTGGCTGCTGCTGCAAAGATTGGGAAGTTGTTGG
GGGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTCCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTTAGGGAAGCAGGT
ATTAAGCTCCTT
Protein sequenceShow/hide protein sequence
MVIPPPVRPARVTQYLKPYVLKMHFTNKYVSAQVVHSETATVASAASSQEKALRASMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
IKLL